DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG15696 and Hoxb13

DIOPT Version :10

Sequence 1:NP_650921.1 Gene:CG15696 / 42469 FlyBaseID:FBgn0038833 Length:179 Species:Drosophila melanogaster
Sequence 2:NP_001100511.1 Gene:Hoxb13 / 303480 RGDID:1309113 Length:286 Species:Rattus norvegicus


Alignment Length:147 Identity:39/147 - (26%)
Similarity:67/147 - (45%) Gaps:37/147 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 LGVLQRLRAS--------LP---FHPYAHPASYVSK---ESGGSPP-----ASAAEAQIPVYDWL 69
            :.|:|.|.|.        ||   :.|:|....:.|:   :...:||     |:.||..:      
  Rat   147 VSVVQTLGAPGEPRHDSLLPVDSYQPWALAGGWNSQMCCQGEQNPPGPFWKAAFAEPSV------ 205

  Fly    70 QYTRYHPPKLPRALRQNAPAKRTPGRLPRIPFTPQQLQALENAYKESNYLSAEDANKLADSLELT 134
                .|||....|.|:        ||..|||::..||:.||..|..:.:::.:...|::.:..|:
  Rat   206 ----QHPPPDGCAFRR--------GRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLS 258

  Fly   135 NTRVKIWFQNRRARERR 151
            ..::.|||||||.:|::
  Rat   259 ERQITIWFQNRRVKEKK 275

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG15696NP_650921.1 Homeodomain 95..144 CDD:459649 14/48 (29%)
Hoxb13NP_001100511.1 HoxA13_N 12..124 CDD:463521
Homeodomain 219..275 CDD:459649 19/55 (35%)
Blue background indicates that the domain is not in the aligned region.

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