DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG15696 and Hoxd3

DIOPT Version :10

Sequence 1:NP_650921.1 Gene:CG15696 / 42469 FlyBaseID:FBgn0038833 Length:179 Species:Drosophila melanogaster
Sequence 2:NP_001257967.1 Gene:Hoxd3 / 288152 RGDID:1588601 Length:432 Species:Rattus norvegicus


Alignment Length:149 Identity:45/149 - (30%)
Similarity:72/149 - (48%) Gaps:14/149 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 SLPFHPYAHPASYV-SKESGGSPPASAAEAQI--PVYDWLQYTRYHPPKLPRALR--QNAPAKRT 92
            :||.....:|.|.| :|::.|.|.||::.:.|  .::.|::.:|.:..:......  :|...|..
  Rat   125 TLPPSSPTNPGSGVPAKKTKGGPNASSSSSTISKQIFPWMKESRQNSKQKNSCATSGENCEDKSP 189

  Fly    93 PG---RLPRIPFTPQQLQALENAYKESNYLSAEDANKLADSLELTNTRVKIWFQNRRARERREKR 154
            ||   :..|..:|..||..||..:..:.||......::|:.|.||..::||||||||.     |.
  Rat   190 PGPASKRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRM-----KY 249

  Fly   155 EKDESCDSTFSSNA-SSPE 172
            :||:.......|.| .|||
  Rat   250 KKDQKAKGILHSPAGQSPE 268

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG15696NP_650921.1 Homeodomain 95..144 CDD:459649 16/48 (33%)
Hoxd3NP_001257967.1 Homeodomain 195..251 CDD:459649 21/60 (35%)
DUF4074 369..430 CDD:463833
Blue background indicates that the domain is not in the aligned region.

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