DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG15696 and lin-39

DIOPT Version :10

Sequence 1:NP_650921.1 Gene:CG15696 / 42469 FlyBaseID:FBgn0038833 Length:179 Species:Drosophila melanogaster
Sequence 2:NP_001021164.1 Gene:lin-39 / 176068 WormBaseID:WBGene00003024 Length:253 Species:Caenorhabditis elegans


Alignment Length:115 Identity:35/115 - (30%)
Similarity:52/115 - (45%) Gaps:31/115 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    46 VSKESGGSPPASAAEAQIPVYDWLQYTRYHPPKLPRALRQNAPAKRTPG----RLPRIPFTPQQL 106
            :.|.|||:           ||.|:  ||.|              ..|.|    :..|..:|..|:
 Worm   140 MDKNSGGA-----------VYPWM--TRVH--------------STTGGSRGEKRQRTAYTRNQV 177

  Fly   107 QALENAYKESNYLSAEDANKLADSLELTNTRVKIWFQNRRARERREKREK 156
            ..||..:....||:.:...::|.||.||..:|||||||||.:.::|.::|
 Worm   178 LELEKEFHTHKYLTRKRRIEVAHSLMLTERQVKIWFQNRRMKHKKENKDK 227

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG15696NP_650921.1 Homeodomain 95..144 CDD:459649 17/48 (35%)
lin-39NP_001021164.1 Homeodomain 166..222 CDD:459649 21/55 (38%)

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