back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment CG15696 and Hoxa4

DIOPT Version :10

Sequence 1:	NP_650921.1	Gene:	CG15696 / 42469	FlyBaseID:	FBgn0038833	Length:	179	Species:	Drosophila melanogaster
Sequence 2:	NP_032291.1	Gene:	Hoxa4 / 15401	MGIID:	96176	Length:	285	Species:	Mus musculus

Alignment Length:	200	Identity:	50/200 - (25%)
Similarity:	70/200 - (35%)	Gaps:	72/200 - (36%)

- Green bases have known domain annotations that are detailed below.

  Fly    31 RASLPFHP---YAHPASYVSKESGGSPPASAAEAQIPVYDWLQYTRYHP---PKLPRALRQNAPA 89
            ||..|.:|   |..||:.......|:.||...::..|        ..||   |:.|...|..||.
Mouse    69 RAREPSYPGGLYPAPAAACPYACRGASPARPEQSPAP--------GAHPSPAPQPPAPPRHCAPG 125

  Fly    90 KRTP-----GRLPRIP---------------------------------------------FTPQ 104
            ..||     |..|..|                                             :|.|
Mouse   126 PTTPAVATGGSAPACPLLLADQGPAGPKGKEPVVYPWMKKIHVSAVNSSYNGGEPKRSRTAYTRQ 190

  Fly   105 QLQALENAYKESNYLSAEDANKLADSLELTNTRVKIWFQNRRARERREKREKDESCDST---FSS 166
            |:..||..:..:.||:.....::|.:|.|:..:|||||||||.     |.:||....:|   .|:
Mouse   191 QVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQVKIWFQNRRM-----KWKKDHKLPNTKMRSSN 250

  Fly   167 NASSP 171
            .||:|
Mouse   251 TASAP 255

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 592.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.