DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Synd and TRIP10

DIOPT Version :9

Sequence 1:NP_001262786.1 Gene:Synd / 42467 FlyBaseID:FBgn0053094 Length:495 Species:Drosophila melanogaster
Sequence 2:XP_006723003.1 Gene:TRIP10 / 9322 HGNCID:12304 Length:649 Species:Homo sapiens


Alignment Length:580 Identity:103/580 - (17%)
Similarity:197/580 - (33%) Gaps:183/580 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 WEPGNYKRTTKRIEDGYKLCNDLQQLIQERADIEKGYAKSLRTWSKKWGELIEKGPEYGTTEA-- 80
            |:  .::...:..:.|..|.:...:.::||.::|:.|||.||:..||:   :.|.|.....|:  
Human     8 WD--QFEVLERHTQWGLDLLDRYVKFVKERTEVEQAYAKQLRSLVKKY---LPKRPAKDDPESKF 67

  Fly    81 ----AWKGVLTESERISDVHMKIKDNLCNDVNSQIKTWQKENYHHTLMQIKE----RKDLEDLFK 137
                ::..:|.|....:.....:.:||...|..::..:.:|......|..:|    ::.||:.||
Human    68 SQQQSFVQILQEVNDFAGQRELVAENLSVRVCLELTKYSQEMKQERKMHFQEGRRAQQQLENGFK 132

  Fly   138 KAQKPWAKLLAKVEKAKADYHSACKTERSATNQERNANADSSLSPDQVKKMHDRVQKTKDQVQKC 202
                       ::|.:|..:...|:....|.......:.|.:.:...|:|...:........::.
Human   133 -----------QLENSKRKFERDCREAEKAAQTAERLDQDINATKADVEKAKQQAHLRSHMAEES 186

  Fly   203 REKYEQAIAEITKYN----SVYIEDMTSVFEKCQTFEK---TRL--------QFFKEILFNVHSC 252
            :.:|   .|::.::|    ..|...|..:|:|.|..::   |||        :...|::..:..|
Human   187 KNEY---AAQLQRFNRDQAHFYFSQMPQIFDKLQDMDERRATRLGAGYGLLSEAELEVVPIIAKC 248

  Fly   253 LDLTKVQS-----------LPQI------------YEEFSHTINNADQQKDLKWWSNNH------ 288
            |:..||.:           |.::            :|:||..:|.|.....|...|:..      
Human   249 LEGMKVAANAVDPKNDSHVLIELHKSGFARPGDVEFEDFSQPMNRAPSDSSLGTPSDGRPELRGP 313

  Fly   289 GINMAMNWPSFVEYTEEFRDIAKGNKSK------------EALPAA---------PITLINQ--- 329
            |.:....||           ..|.||.:            .|||..         |:.::::   
Human   314 GRSRTKRWP-----------FGKKNKPRPPPLSPLGGPVPSALPNGPPSPRSGRDPLAILSEISK 367

  Fly   330 --RP---------------VAED-----------------------VHQEYPQTNSLKKNTSTLS 354
              :|               |.||                       :.:|..|..:|||......
Human   368 SVKPRLASFRSLRGSRGTVVTEDFSHLPPEQQRKRLQQQLEERSRELQKEVDQREALKKMKDVYE 432

  Fly   355 ---SVSSRASVKSEIATTQSSVTTSEAKTSAAVAGAATATAAATAASAASNRNSSV--------- 407
               .:...||::.:||.|.|::...:.:.....|..|.|     .:...|||..|:         
Human   433 KTPQMGDPASLEPQIAETLSNIERLKLEVQKYEAWLAEA-----ESRVLSNRGDSLSRHARPPDP 492

  Fly   408 --------TNGNGKVDANPFDEEEEWDESDNVLV----DNG---EPGVPV---KALYDYE 449
                    ::.:...|.....||...:||.:..:    |..   ||..|:   .|:|.:|
Human   493 PASAPPDSSSNSASQDTKESSEEPPSEESQDTPIYTEFDEDFEEEPTSPIGHCVAIYHFE 552

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SyndNP_001262786.1 F-BAR_PACSIN 17..272 CDD:153339 55/301 (18%)
SH3_PACSIN 441..493 CDD:212777 4/12 (33%)
TRIP10XP_006723003.1 F-BAR_CIP4-like 5..257 CDD:153337 51/267 (19%)
HR1_CIP4_FNBP1L 395..475 CDD:212018 14/84 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2056
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.940

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