DRSC/TRiP Functional Genomics Resources

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Protein Alignment Synd and PSTPIP2

DIOPT Version :9

Sequence 1:NP_001262786.1 Gene:Synd / 42467 FlyBaseID:FBgn0053094 Length:495 Species:Drosophila melanogaster
Sequence 2:NP_077748.3 Gene:PSTPIP2 / 9050 HGNCID:9581 Length:334 Species:Homo sapiens


Alignment Length:321 Identity:70/321 - (21%)
Similarity:133/321 - (41%) Gaps:39/321 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 SFWEPG-----NYKRTTKRIEDGYKLCNDLQQLIQERADIEKGYAKSLRTWSKK--WGELIEKGP 73
            :||...     .|....:.:.:|.|.|.:.:..::|||.||:.|.|.|...|:|  .|:     .
Human     9 NFWSADILSTIGYDNIIQHLNNGRKNCKEFEDFLKERAAIEERYGKDLLNLSRKKPCGQ-----S 68

  Fly    74 EYGTTEAAWKGVLTESERISDVHMKIKDNLCNDVNSQIKTWQKENYHHTLMQIKERKDLEDLFKK 138
            |..|.:.|.:....:.:.::..|:::..:|..:.....:..:|:..        :||..|.:...
Human    69 EINTLKRALEVFKQQVDNVAQCHIQLAQSLREEARKMEEFREKQKL--------QRKKTELIMDA 125

  Fly   139 AQKPWAKLLAKVEKAKADYHSACKTERSATNQ-ERNANADSSLSPDQVKKMHDRVQKTKDQVQKC 202
            ..|..:....|...||.:|...|:.:..|... .|:||.   ::|.|.:|:..::..:|..|:..
Human   126 IHKQKSLQFKKTMDAKKNYEQKCRDKDEAEQAVSRSANL---VNPKQQEKLFVKLATSKTAVEDS 187

  Fly   203 REKYEQAIAEITKYNSVYIEDMTSVFEKCQTFEK---TRLQFFKEILFNVHSCLDLTKVQSLPQI 264
            .:.|...|..:.|   |..|..:...:.|:.||.   .|:.||:..|:...:.|....|.| .::
Human   188 DKAYMLHIGTLDK---VREEWQSEHIKACEAFEAQECERINFFRNALWLHVNQLSQQCVTS-DEM 248

  Fly   265 YEEFSHTINNADQQKDLKWWSNNHGINMAMNWPSFVEYTEEFRDIAKGNKSKEALPAAPIT 325
            ||:...::.....|:|::::.|........  |:.:.| |.|.     :..|.|:||...|
Human   249 YEQVRKSLEMCSIQRDIEYFVNQRKTGQIP--PAPIMY-ENFY-----SSQKNAVPAGKAT 301

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SyndNP_001262786.1 F-BAR_PACSIN 17..272 CDD:153339 58/265 (22%)
SH3_PACSIN 441..493 CDD:212777
PSTPIP2NP_077748.3 F-BAR_PSTPIP2 15..254 CDD:153356 56/258 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 295..322 3/7 (43%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D727724at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.920

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