DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Synd and LSB1

DIOPT Version :9

Sequence 1:NP_001262786.1 Gene:Synd / 42467 FlyBaseID:FBgn0053094 Length:495 Species:Drosophila melanogaster
Sequence 2:NP_011652.1 Gene:LSB1 / 853037 SGDID:S000003368 Length:241 Species:Saccharomyces cerevisiae


Alignment Length:102 Identity:32/102 - (31%)
Similarity:53/102 - (51%) Gaps:21/102 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   403 RNSSVTNG------NGKVDANPFDEEEEWDESDNVLVDNGEPGVPVKALYDYEGAESDELTFKQG 461
            :.|:|.:|      |.|:       .|:||.:.. ...|.:....|:||||:|..:..:|:.|.|
Yeast    21 KESNVISGDIFELINSKL-------PEKWDGNQR-SPQNADTEEYVEALYDFEAQQDGDLSLKTG 77

  Fly   462 D---VFEKLEDEDEQGWCKGRMNGRVGLYPANYVETA 495
            |   |.||:..:    |.:|:.|.::|::|||||:.|
Yeast    78 DKIQVLEKISPD----WYRGKSNNKIGIFPANYVKPA 110

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SyndNP_001262786.1 F-BAR_PACSIN 17..272 CDD:153339
SH3_PACSIN 441..493 CDD:212777 21/54 (39%)
LSB1NP_011652.1 SH3 55..108 CDD:214620 21/56 (38%)
PRK14971 <100..>156 CDD:237874 7/11 (64%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2056
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.030

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