DRSC/TRiP Functional Genomics Resources

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Protein Alignment Synd and SYP1

DIOPT Version :10

Sequence 1:NP_001262786.1 Gene:Synd / 42467 FlyBaseID:FBgn0053094 Length:495 Species:Drosophila melanogaster
Sequence 2:NP_009959.2 Gene:SYP1 / 850396 SGDID:S000000626 Length:870 Species:Saccharomyces cerevisiae


Alignment Length:451 Identity:81/451 - (17%)
Similarity:156/451 - (34%) Gaps:160/451 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    35 KLCN-DLQQLIQERADIEKGYAKSLRTWSKKWGELIEKGPEYGTTEAAWKGVLTESERISDVHMK 98
            ||.| |...|.:|.|::::.||:.||.                        ::.|:|.|:    |
Yeast    33 KLLNKDFYLLFKELANLKRNYAQQLRK------------------------IIAENEDIT----K 69

  Fly    99 IKDNLCNDVNSQIKTWQKENYHHTLMQIKERKDLEDLFKKAQKPWAKLLAKVEKAKADYHSACKT 163
            |.:  ...:.|.:.|.|:       |.......|.:|    :..|..:   :|:.|:|..|:.:.
Yeast    70 ILN--AQMIESNVLTPQE-------MSAFRFNSLGEL----RNVWDTV---IEELKSDLKSSTEY 118

  Fly   164 ERSATNQ---ERNANADSSLSPDQVKKMHDRVQKTKDQVQKCREKYEQAIAEITKYNSVYIEDMT 225
            ..:...|   |...:.:::.|..:.|.:|.::.|                      |:..||..:
Yeast   119 YNTLDQQVVRELKESVENNTSWRESKDLHSKLSK----------------------NAASIEHYS 161

  Fly   226 SVFEKCQTFEKTRLQFFKE--ILFNVHSCLDLTKVQSLP----QIYEEFSHTINNADQQKDLKWW 284
            ...|.....|:.|.|:.::  .||.:...:|..::.:|.    :....||..:.|..::.:    
Yeast   162 KNNENSSHLEEARRQWDQQSPYLFELFETIDYNRLDTLKNCMLRFQTSFSDYLLNTTKECE---- 222

  Fly   285 SNNHGINMAMNWPSFVEYTEEFRDIAK---------GNKSKEALP--AAPITLINQRPVA----- 333
                  .:...:.:| |...|....||         .:.|||.:|  |:|.:....|||:     
Yeast   223 ------TVMTKFLAF-EPQSEIDRFAKDASQYNFQLSSSSKEVVPNNASPASATGARPVSVSNGA 280

  Fly   334 --EDVHQEYPQTNSLKK------------------------------NTSTLSSVSSRASVKSEI 366
              .:..::.||.:..|.                              |.|:|.|..|..:::|::
Yeast   281 ANTEREKKSPQKDKRKSAFGNIGHRLASASSSLTHNDLMNNEFSDSTNNSSLKSKKSSHTLRSKV 345

  Fly   367 AT--------------------TQSSVTTSEAKTSAAVAGAATAT-----AAATAASAASN 402
            .:                    .|:|:|.:...:|..|:..||::     ...|.:|:.||
Yeast   346 GSIFGRNKTKNKRQQQSSSNSHIQASITETPNNSSTRVSSTATSSIYQKQRRPTYSSSKSN 406

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SyndNP_001262786.1 F-BAR_PACSIN 17..272 CDD:153339 46/246 (19%)
SH3_PACSIN 441..493 CDD:212777
SYP1NP_009959.2 F-BAR_Syp1p_like 16..250 CDD:153334 52/293 (18%)
PHA03307 251..>530 CDD:223039 29/156 (19%)
Atrophin-1 <393..>580 CDD:460830 4/14 (29%)
muHD 610..867 CDD:463046
Blue background indicates that the domain is not in the aligned region.

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