DRSC/TRiP Functional Genomics Resources

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Protein Alignment Synd and Pacsin3

DIOPT Version :9

Sequence 1:NP_001262786.1 Gene:Synd / 42467 FlyBaseID:FBgn0053094 Length:495 Species:Drosophila melanogaster
Sequence 2:NP_001276606.1 Gene:Pacsin3 / 80708 MGIID:1891410 Length:424 Species:Mus musculus


Alignment Length:497 Identity:176/497 - (35%)
Similarity:276/497 - (55%) Gaps:98/497 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 AGSD----SFWEPGNYKRTTKRIEDGYKLCNDLQQLIQERADIEKGYAKSLRTWSKKWGELIEKG 72
            ||.:    ||||.|||:||.:|:|||::||.||....||||.|||.||:.|..|::||...:|||
Mouse     7 AGGEVLGGSFWEAGNYRRTVQRVEDGHRLCGDLVSCFQERARIEKAYAQQLADWARKWRGAVEKG 71

  Fly    73 PEYGTTEAAWKGVLTESERISDVHMKIKDNLCNDVNSQIKTWQKENYHHTLM-QIKERKDLEDLF 136
            |:|||.|.||....|.:||:|::|:::::.|....:.:::|||:..:|..:: ..:|.:..||.|
Mouse    72 PQYGTLEKAWHAFFTAAERLSELHLEVREKLHGPDSERVRTWQRGAFHRPVLGGFRESRAAEDGF 136

  Fly   137 KKAQKPWAKLLAKVEKAKADYHSACKTERSATNQERNANADSSLSPDQVKKMHDRVQKTKDQVQK 201
            :||||||.|.|.:||.:|..||:|.|.|::|..:|.:|.||||:|.:|::|:.:||.:...:.:|
Mouse   137 RKAQKPWLKRLKEVEASKKSYHTARKDEKTAQTRESHAKADSSMSQEQLRKLQERVGRCTKEAEK 201

  Fly   202 CREKYEQAIAEITKYNSVYIEDMTSVFEKCQTFEKTRLQFFKEILFNVHSCLDLTKVQSLPQIYE 266
            .:.:|||.:||:.:|...|:|||...||.||..|:.||.|||::|..:|..|||:......:::.
Mouse   202 MKTQYEQTLAELNRYTPRYMEDMEQAFESCQAAERQRLLFFKDVLLTLHQHLDLSSSDKFHELHR 266

  Fly   267 EFSHTINNADQQKDLKWWSNNHGINMAMNWPSFVEYT-EEFRDIA---KGNKSKEALPAAPITLI 327
            :...:|..|..::||:||.:.||..||||||.|.|:: :..|.|:   ||.:|.:.:        
Mouse   267 DLQQSIEAASDEEDLRWWRSTHGPGMAMNWPQFEEWSLDTQRAISRKEKGGRSPDEV-------- 323

  Fly   328 NQRPVAEDVHQEYPQTNSLKKNTSTLSSVSSRASVKSEIATTQSSVTTSEAKTSAAVAGAATATA 392
                                    ||:|:         :.|...:....::.:|.          
Mouse   324 ------------------------TLTSI---------VPTRDGTAPPPQSPSSP---------- 345

  Fly   393 AATAASAASNRNSSVTNGNGKVDANPFDEEEEWDESDNVLVDNGEP-----GVPVKALYDYEGAE 452
                             |:|        ::|:|.:.::       |     ||.|:|||||.|.|
Mouse   346 -----------------GSG--------QDEDWSDEES-------PRKVATGVRVRALYDYAGQE 378

  Fly   453 SDELTFKQGDVFEKLEDEDEQGWCKGRM-NGRVGLYPANYVE 493
            :|||:|:.|:...|:.:|||||||:|:: :||:|||||||||
Mouse   379 ADELSFRAGEELLKMSEEDEQGWCQGQLQSGRIGLYPANYVE 420

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SyndNP_001262786.1 F-BAR_PACSIN 17..272 CDD:153339 107/255 (42%)
SH3_PACSIN 441..493 CDD:212777 31/52 (60%)
Pacsin3NP_001276606.1 BAR 16..273 CDD:386243 107/256 (42%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 154..184 14/29 (48%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 312..362 13/132 (10%)
SH3_PACSIN3 365..420 CDD:212930 33/54 (61%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167849610
Domainoid 1 1.000 230 1.000 Domainoid score I2436
eggNOG 1 0.900 - - E1_KOG2856
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 421 1.000 Inparanoid score I1765
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG54548
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001073
OrthoInspector 1 1.000 - - otm42747
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR23065
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2056
SonicParanoid 1 1.000 - - X728
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1312.890

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