DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Synd and si:ch211-51c14.1

DIOPT Version :9

Sequence 1:NP_001262786.1 Gene:Synd / 42467 FlyBaseID:FBgn0053094 Length:495 Species:Drosophila melanogaster
Sequence 2:XP_021327115.1 Gene:si:ch211-51c14.1 / 568811 ZFINID:ZDB-GENE-120215-48 Length:389 Species:Danio rerio


Alignment Length:484 Identity:157/484 - (32%)
Similarity:239/484 - (49%) Gaps:111/484 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 AGSDSFWEPGNYKRTTKRIEDGYKLCNDLQQLIQERADIEKGYAKSLRTWSKKWGELIEKGPEYG 76
            |.:.|||.||||.:|.||.||.::.|||:....||||.:|:.||:.|..||.||..|::..|.||
Zfish    13 ANNQSFWMPGNYHQTVKRTEDSFQACNDIVACFQERARVERQYAQQLSEWSAKWKPLVDASPLYG 77

  Fly    77 TTEAAWKGVLTESERISDVHMKIKDNLCNDVNSQIKTWQKENYHHTLM-QIKERKDLEDLFKKAQ 140
            :...||:..|:.::|:|.:|..|...|.::...:|:|||||.:|..:. ..||.:|.|..|.:||
Zfish    78 SLLRAWQCFLSSADRLSSLHSSICRALVSEDGDRIRTWQKETFHKKIFGGFKESQDFETGFSRAQ 142

  Fly   141 KPWAKLLAKVEKAKADYHSACKTERSATNQERNANADSSLSPDQVKKMHDRVQKTKDQVQKCREK 205
            |||||.|.|:|||::.:|.||:.|..|..:|.:|..:..::.::.:|:.:..:....:.:|.|.:
Zfish   143 KPWAKRLKKLEKARSAFHKACRKEHMARERETHAQGNPDIAIEKQRKIQEETELAHQETEKVRAR 207

  Fly   206 YEQAIAEITKYNSVYIEDMTSVFEKCQTFEKTRLQFFKEILFNVHSCLDLTKVQSLPQIYEEFSH 270
            ||:.:.|:|:|...|:|:|.|:|::.|..|:.|:.|.|:...::|..||:|..:|:..:|.|...
Zfish   208 YEKVLEEVTRYAPRYMEEMESIFDQSQEEERKRISFLKQAFLSIHRHLDVTNNESVKAVYNELHD 272

  Fly   271 TINNADQQKDLKWWSNNHGINMAMNWPSFVEYTEEFRDIAKGNKSKEALPAAPITLINQRPVAED 335
            |:.:..:|:||:||.|.||..|..:||.|.|:|.:                              
Zfish   273 TLMSISEQEDLRWWKNTHGPGMPTDWPQFQEWTPD------------------------------ 307

  Fly   336 VHQEYPQTNSLKKNTSTLSSVSSRASVKSEIATTQSSVTTSEAKTSAAVAGAATATAAATAASAA 400
                       ||:......|..:|:|...                                   
Zfish   308 -----------KKHKKGKKEVEQKAAVMER----------------------------------- 326

  Fly   401 SNRNSSVTNGNGKVDANPFDEEEEWDESDNVLVDNGEPGVPVKALYDYEGAESDELTFKQGDVFE 465
                 ||..|                            ||.|:|||||.|.|:|||:||.|:.|.
Zfish   327 -----SVMIG----------------------------GVRVRALYDYVGQETDELSFKAGEEFL 358

  Fly   466 KLEDEDEQGWCKGRMN-GRVGLYPANYVE 493
            |:||||:||||:|.|: |:.|||||||||
Zfish   359 KIEDEDDQGWCRGMMDGGKEGLYPANYVE 387

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SyndNP_001262786.1 F-BAR_PACSIN 17..272 CDD:153339 94/255 (37%)
SH3_PACSIN 441..493 CDD:212777 34/52 (65%)
si:ch211-51c14.1XP_021327115.1 F-BAR_PACSIN 18..275 CDD:153339 95/256 (37%)
SH3 332..387 CDD:327375 36/54 (67%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170595355
Domainoid 1 1.000 79 1.000 Domainoid score I8586
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG54548
OrthoDB 1 1.010 - - D432948at33208
OrthoFinder 1 1.000 - - FOG0001073
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR23065
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X728
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
98.960

Return to query results.
Submit another query.