DRSC/TRiP Functional Genomics Resources

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Protein Alignment Synd and sh3d19

DIOPT Version :9

Sequence 1:NP_001262786.1 Gene:Synd / 42467 FlyBaseID:FBgn0053094 Length:495 Species:Drosophila melanogaster
Sequence 2:XP_009289295.1 Gene:sh3d19 / 553811 ZFINID:ZDB-GENE-050522-481 Length:963 Species:Danio rerio


Alignment Length:448 Identity:93/448 - (20%)
Similarity:140/448 - (31%) Gaps:200/448 - (44%)


- Green bases have known domain annotations that are detailed below.


  Fly   168 TNQERNANADSSLS--------PDQVKKMHDRVQKTKDQV-------QKCREKY----EQAIAEI 213
            ||..:...:||..|        |.|.::.:.|..|....:       .:...||    ...|||.
Zfish   588 TNNSQRRPSDSGFSQIAPSKQQPSQWQQQNRRASKKGPALPPRPNPGHRLYNKYTLEVPHGIAEF 652

  Fly   214 TKYNS--------------VYIEDMTSVFEKCQ------TFEKTRLQFFKEILFNVHSCLDLTKV 258
             .||.              |.:|::.|...:||      |.:|:.::....:       .||:. 
Zfish   653 -DYNGSNTGELSFQKNEVLVLLEELDSRTFECQAGNTKGTVQKSHMKIITPL-------TDLSS- 708

  Fly   259 QSLPQIYEEF------------------------------SHTINNADQQKDLKWW----SNNHG 289
            .||||....|                              ...::|.:|..| .|:    .|..|
Zfish   709 NSLPQKTSSFRGMGGNAGSLQVEALYDFTPAGPGELALKAGDVVSNVEQLDD-DWYMGTCRNATG 772

  Fly   290 ---IN--MAMNWPSFVEYTEEFRDIAKGNKSKEALPAAPITLINQRPVA---------------- 333
               ||  ..::.|:.  |...||:..|...|       |.|:...|.||                
Zfish   773 FFPINYVKVLSKPNI--YAPAFRNEWKNKPS-------PETVRGPRCVARFDFEGEQGDELSFFE 828

  Fly   334 EDVHQ--EY-------PQTN--------SLKKNTSTLSSVSSRASVKSEIA-------TTQSSVT 374
            :||.|  ||       .:.|        :..:....|.||..:.|..::||       :||||..
Zfish   829 DDVIQLKEYLGEEWARGEVNGHVGIFPLNFVEVIEDLPSVPVQKSAPNKIALPGMASSSTQSSYR 893

  Fly   375 TSEAKTSAAVAGAATATAAATAASAASNRNSSVTNGNGKVDANPFDEEEEWDESDNVLVDNGEPG 439
            .|||:::.|                                        ||              
Zfish   894 ASEAESNGA----------------------------------------EW-------------- 904

  Fly   440 VPVKALYDYEGAESDELTFKQGD---VFEKLEDEDEQGWCKGRMNGRVGLYPANYVET 494
              ..||||:.....::|.|:|||   |...::||    |..||:|||.|.:|..:||:
Zfish   905 --AVALYDFTAETEEDLPFQQGDRILVTAHVDDE----WWSGRINGREGFFPKAFVES 956

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SyndNP_001262786.1 F-BAR_PACSIN 17..272 CDD:153339 30/172 (17%)
SH3_PACSIN 441..493 CDD:212777 20/54 (37%)
sh3d19XP_009289295.1 SH3 647..696 CDD:302595 12/49 (24%)
SH3 732..782 CDD:302595 8/50 (16%)
SH3_Eve1_3 809..859 CDD:212750 9/49 (18%)
SH3_Eve1_4 904..953 CDD:212751 21/68 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2056
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.030

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