DRSC/TRiP Functional Genomics Resources

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Protein Alignment Synd and pacsin1a

DIOPT Version :10

Sequence 1:NP_001262786.1 Gene:Synd / 42467 FlyBaseID:FBgn0053094 Length:495 Species:Drosophila melanogaster
Sequence 2:NP_001315286.2 Gene:pacsin1a / 553559 ZFINID:ZDB-GENE-050522-155 Length:438 Species:Danio rerio


Alignment Length:495 Identity:209/495 - (42%)
Similarity:288/495 - (58%) Gaps:68/495 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 HSDDQLLQAGSDSFWEPGNYKRTTKRIEDGYKLCNDLQQLIQERADIEKGYAKSLRTWSKKWGEL 68
            :.:..:.....|||||.|||||..|||:||::|||||...:||||.|||.|:..|..|||:|.:|
Zfish     5 YDESAVADEAMDSFWEVGNYKRAVKRIDDGHRLCNDLMNCLQERAKIEKSYSAQLTEWSKRWRQL 69

  Fly    69 IEKGPEYGTTEAAWKGVLTESERISDVHMKIKDNLCNDVNSQIKTWQKENYHHTLM-QIKERKDL 132
            |||||:||:.|.||..::||::::|::|.::|:.|.|:...::|.|||::||..:| ..||.|:.
Zfish    70 IEKGPQYGSVERAWIAMMTEADKVSELHQEVKNGLMNEDVEKVKNWQKDSYHRQMMGGFKETKEA 134

  Fly   133 EDLFKKAQKPWAKLLAKVEKAKADYHSACKTERSATNQERNANADSSLSPDQVKKMHDRVQKTKD 197
            |:.||||||||||.|.::|.||..||.|||.|:.|.::|    ||:|::|||.||:|::.:|.|.
Zfish   135 EEGFKKAQKPWAKKLKEMETAKKTYHMACKEEKLAASRE----ADASVTPDQQKKLHEKTEKCKQ 195

  Fly   198 QVQKCREKYEQAIAEITKYNSVYIEDMTSVFEKCQTFEKTRLQFFKEILFNVHSCLDLTKVQSLP 262
            .|||.:||||:::.|::|....|:|.|..||::||..|..||.|.||:|.::...|:||:.|:..
Zfish   196 DVQKAKEKYEKSLDELSKCRPPYMESMEQVFDQCQQHEVKRLTFLKEVLLDIKRHLNLTENQNYA 260

  Fly   263 QIYEEFSHTINNADQQKDLKWWSNNHGINMAMNWPSFVEYTEEFRD-IAKGNKSKE--ALPAAPI 324
            .:|.||..||..|:.|:||||:|||||..|.||||.|.||..|..: :||..|.|.  ..||.| 
Zfish   261 AVYREFERTILAANTQEDLKWFSNNHGPGMHMNWPQFEEYNPEATNAVAKREKKKPDGVAPATP- 324

  Fly   325 TLINQRPVAEDVHQEYPQTNSLKKNTSTLSSVSSRASVKSEIATTQSSVTTSEAKTSAAVAGAAT 389
                                    ||........|.||.|.......|...|:.:..|..:|   
Zfish   325 ------------------------NTEHAGQPGDRGSVSSYDKNQAYSTEWSDDEQPAGYSG--- 362

  Fly   390 ATAAATAASAASNRNSSVTNGNGKVDANPFDEEEEWDESDNVLVDNGEPGVPVKALYDYEGAESD 454
                            :.|||.    ||.|:|:..           ...||.|:|||||:|.|.|
Zfish   363 ----------------NETNGG----ANSFEEDTA-----------SRGGVRVRALYDYDGQEQD 396

  Fly   455 ELTFKQGDVFEKLEDEDEQGWCKGRM-NGRVGLYPANYVE 493
            ||:||.||...|:|:||:||||:||: :||.|||||||||
Zfish   397 ELSFKAGDELTKIEEEDDQGWCRGRLDSGRSGLYPANYVE 436

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SyndNP_001262786.1 F-BAR_PACSIN 17..272 CDD:153339 123/255 (48%)
SH3_PACSIN 441..493 CDD:212777 34/52 (65%)
pacsin1aNP_001315286.2 None

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