DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Synd and fnbp1l

DIOPT Version :9

Sequence 1:NP_001262786.1 Gene:Synd / 42467 FlyBaseID:FBgn0053094 Length:495 Species:Drosophila melanogaster
Sequence 2:XP_031755872.1 Gene:fnbp1l / 448740 XenbaseID:XB-GENE-489112 Length:555 Species:Xenopus tropicalis


Alignment Length:581 Identity:116/581 - (19%)
Similarity:211/581 - (36%) Gaps:152/581 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 WEPGNYKRTTKRIEDGYKLCNDLQQLIQERADIEKGYAKSLRTWSKKW---GELIEKGPEYGTTE 79
            |:  .:....|..:.|....:...:.::||.:||:.|||.||...||:   ....::.|.: |:.
 Frog     8 WD--QFDNLEKHTQWGIDFLDKYAKFVKERLEIEQNYAKQLRNLVKKYCPKRSAKDEEPRF-TSC 69

  Fly    80 AAWKGVLTESERISDVHMKIKDNLCNDVNSQIKTWQKENYHHTLMQIK--------ERKDLEDLF 136
            .::..:|.|               .||...|.:...:|..|....:|.        |||......
 Frog    70 LSFYNILNE---------------LNDYAGQREVVAEEMGHRVYAEIMRYSNDIKGERKSHLQEG 119

  Fly   137 KKAQKPWAKLLAKVEKAKADYHSACKTERSATNQERNANADSSLSPDQVKKMHDRVQKTKDQVQK 201
            :|||:.....|.:::.:|..:...|:....|.......:.||:.:...|:|...::........:
 Frog   120 RKAQQYLDMCLKQMDNSKRKFERECREAEKAQQTYERLDNDSNATKSDVEKAKQQLHLRTHMADE 184

  Fly   202 CREKYEQAIAEITKYNS-----VYIEDMTSVFEKCQTFEKTRLQFFKE-----------ILFNVH 250
            .:.:|   .|::..||:     .||. :..|::..|..::.|.....|           ::..:.
 Frog   185 SKNEY---AAQLQNYNAEQHKHFYIV-IPQVYKHLQEMDERRTVKLSECYKGFADAERKVIPIIS 245

  Fly   251 SCLDLTKVQSLPQI------------------------YEEFSHTIN--------NADQQKDLK- 282
            .||: ..||:...:                        :|::|..|.        :..:|:.|| 
 Frog   246 KCLE-GMVQAAKSVDERRDSQIVVDCFKSGFEPNGDYPFEDYSQHIYRTVSDGTISTPKQESLKP 309

  Fly   283 -------------W-------WSNNHGINMAMNWPSFVEYT----------------EEFRDIAK 311
                         |       ||...|       |:..:::                |..|::.|
 Frog   310 DPRVTVGKAKGKLWLFGKKPKWSLRMG-------PALEDFSHLPPEQRRKRLQQRIDELSRELQK 367

  Fly   312 GNKSKEALPAAPITLINQRPVAEDVHQEYPQ---TNSL-KKNTSTLSSVSSRASVKSEIATTQSS 372
            ....|:||        |:   .:||:::.||   .:|| .|...|.|::.   .::.||...::.
 Frog   368 EMDQKDAL--------NK---MKDVYEKNPQMGDPSSLHPKIAETTSNIE---RLRMEIHKNEAW 418

  Fly   373 VTTSEAKTSAAVAGAATATAAATAASAASNRNSSVT---NGNGKVDANPFDEEEEWDESDNVLVD 434
            ::..|.|.|.......:|.|....|....:...|.|   |..|:|...|....|..||.|:   |
 Frog   419 LSEVEGKVSQRSERRHSAEANHLVAQGRESPEGSYTEDANQEGRVQPQPHAHPEFDDEFDD---D 480

  Fly   435 NGEPGV-PVKALYDYEGAESDELTFKQGDVFEKLEDEDEQGWCKGR-MNGRVGLYPANYVE 493
            ...|.: ..|:||.::|.....|..|:|:|...:|::...||.:.| .||..|..|.:|::
 Frog   481 EPLPAIGHCKSLYPFDGNNEGTLAMKEGEVLYIIEEDKGDGWTRARKQNGEEGYVPTSYID 541

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SyndNP_001262786.1 F-BAR_PACSIN 17..272 CDD:153339 54/304 (18%)
SH3_PACSIN 441..493 CDD:212777 17/52 (33%)
fnbp1lXP_031755872.1 F-BAR_FNBP1L 5..256 CDD:153359 52/270 (19%)
HR1_CIP4_FNBP1L 346..426 CDD:212018 19/93 (20%)
SH3_FNBP1L 487..543 CDD:213005 17/55 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2056
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.940

Return to query results.
Submit another query.