DRSC/TRiP Functional Genomics Resources

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Protein Alignment Synd and pacsin3

DIOPT Version :9

Sequence 1:NP_001262786.1 Gene:Synd / 42467 FlyBaseID:FBgn0053094 Length:495 Species:Drosophila melanogaster
Sequence 2:XP_009301745.2 Gene:pacsin3 / 393964 ZFINID:ZDB-GENE-040426-984 Length:516 Species:Danio rerio


Alignment Length:497 Identity:200/497 - (40%)
Similarity:283/497 - (56%) Gaps:70/497 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSHHSDDQLLQAGS-DSFWEPGNYKRTTKRIEDGYKLCNDLQQLIQERADIEKGYAKSLRTWSKK 64
            ||.:.|  |...|| ||||||||||||.|||:|||||||:|....||||.|||||::.|..|::|
Zfish    82 MSSNGD--LQDVGSWDSFWEPGNYKRTVKRIDDGYKLCNELVSCFQERAKIEKGYSQQLSDWARK 144

  Fly    65 WGELIEKGPEYGTTEAAWKGVLTESERISDVHMKIKDNLCNDVNSQIKTWQKENYHHTLM-QIKE 128
            |..::|||.:|||.|.||...:..::|:|::||::|:||..:.:.:|:.|||:.:|..:: ..:|
Zfish   145 WRGIVEKGSQYGTLEKAWHAFMNAADRLSEIHMELKENLVIEDSEKIRNWQKDAFHKQMIGGFRE 209

  Fly   129 RKDLEDLFKKAQKPWAKLLAKVEKAKADYHSACKTERSATNQERNANADSSLSPDQVKKMHDRVQ 193
            .||.::.|:||||||.:.|.:||..|..||||.|.||:|..:|.:|.||.:.|.|:|:|..||::
Zfish   210 TKDADEGFRKAQKPWVRKLKEVESTKKGYHSARKEERTALTRETHAKADPTKSQDEVRKFTDRLE 274

  Fly   194 KTKDQVQKCREKYEQAIAEITKYNSVYIEDMTSVFEKCQTFEKTRLQFFKEILFNVHSCLDLTKV 258
            |...:.:|.:|:||:|:.|:.:.|..|:|||..|||..|..||.||.||||:|.::|..:||:..
Zfish   275 KCTQEAEKAKERYERALDELNRCNPRYMEDMEQVFEITQEAEKNRLCFFKEVLLDIHQHMDLSSN 339

  Fly   259 QSLPQIYEEFSHTINNADQQKDLKWWSNNHGINMAMNWPSFVEYTEEF-RDIAKGNKSKEALPAA 322
            .....:|.:...||:.|:..:||:||.|.||..|:||||.|.|::.|. |.|::  |.:.:....
Zfish   340 DRFRALYRDLGQTISAANDTEDLRWWRNTHGPGMSMNWPQFEEWSPEANRSISR--KDRNSRSDD 402

  Fly   323 PITLINQRPVAEDVHQEYPQTNSLKKNTSTLSSVSSRASVKSEIATTQSSVTTSEAKTSAAVAGA 387
            .:||.|.....::..|...:|....|:.|  |..|...|.|..||                    
Zfish   403 VVTLTNIVSAGDEPPQTLQETTRAGKDYS--SDWSDEESPKKYIA-------------------- 445

  Fly   388 ATATAAATAASAASNRNSSVTNGNGKVDANPFDEEEEWDESDNVLVDNGEPGVPVKALYDYEGAE 452
                                        ||..||||:            ..||.|:|||||.|.|
Zfish   446 ----------------------------ANGVDEEEK------------VVGVRVRALYDYTGQE 470

  Fly   453 SDELTFKQGDVFEKLEDEDEQGWCKGRM-NGRVGLYPANYVE 493
            :|||:||.|:...||.:|||||||||:: :|..||||||||:
Zfish   471 ADELSFKAGEELLKLGEEDEQGWCKGQLTSGEKGLYPANYVQ 512

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SyndNP_001262786.1 F-BAR_PACSIN 17..272 CDD:153339 116/255 (45%)
SH3_PACSIN 441..493 CDD:212777 33/52 (63%)
pacsin3XP_009301745.2 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170595360
Domainoid 1 1.000 210 1.000 Domainoid score I2753
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 398 1.000 Inparanoid score I1896
OMA 1 1.010 - - QHG54548
OrthoDB 1 1.010 - - D432948at33208
OrthoFinder 1 1.000 - - FOG0001073
OrthoInspector 1 1.000 - - otm25103
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR23065
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2056
SonicParanoid 1 1.000 - - X728
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
1313.040

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