DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Synd and Cip4

DIOPT Version :9

Sequence 1:NP_001262786.1 Gene:Synd / 42467 FlyBaseID:FBgn0053094 Length:495 Species:Drosophila melanogaster
Sequence 2:NP_001097501.1 Gene:Cip4 / 38534 FlyBaseID:FBgn0035533 Length:665 Species:Drosophila melanogaster


Alignment Length:622 Identity:111/622 - (17%)
Similarity:215/622 - (34%) Gaps:197/622 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 TTKRIEDGYKLCNDLQQLIQERADIEKGYAKSLRTWSKKW--GELIEKGPEYGTTEAAWKGVLTE 88
            |.:.|:...|..|    .:::|..||..||..||...|.:  .:..|:..|: |:..|::.:|.|
  Fly    82 TNRGIDALDKFAN----FLRDRVAIETEYAGKLRRLVKNYQPKKKEEEDNEF-TSVQAFRNLLKE 141

  Fly    89 SERISDVHMKIKDNLCNDVNSQIKTWQKENYHHTLMQIKERKDLEDLFKKAQKPWAKL------- 146
            ...::.....:.::|...:.:.:          ||:.    |.|.:..||.....|.|       
  Fly   142 VGDLAGQREVVSESLQLQIIAGV----------TLLS----KTLREERKKCLSDGATLQQNLTTQ 192

  Fly   147 LAKVEKAKADYHSACKTERSATNQERNANADSSLSPDQVKK----MHDRVQKTKD-------QVQ 200
            |:.:::||.:|..|.:....|.:..:.|:.|.:||..:|::    |..::|::.|       |:|
  Fly   193 LSSLDRAKRNYEKAYRDSEKAVDSYKRADMDLNLSRAEVERYKNVMTSKIQQSDDAKNEYANQLQ 257

  Fly   201 KCREKYEQAIAEITKYNSVYIEDMTSVFEKCQTFEKTRLQFFKEILFN-----------VHSCLD 254
            |.....:|..:.:          :.||..:.|..::.|.:.|:|.:..           :..|::
  Fly   258 KTNNLQQQHYSML----------LPSVLNRLQELDEKRTRGFREFIVGAADVESSVAPIIARCME 312

  Fly   255 -------------------------LTKVQSLPQIYEEFSHTINNADQQKDLKWWSNNH------ 288
                                     .|..:.:|  :|:.|....::.|.......::||      
  Fly   313 GIVKAGESINEKEDTFKVIERYQSGFTPPRDIP--FEDLSKCDPDSVQDSHYSNSTSNHLTIRGT 375

  Fly   289 ----------------GINMAMNWPSFVEYTEEFRDIAKGNKSKEALPAAPITLINQRPVAE--- 334
                            |.|  .|..:.....|:|.|:....:.|:.          |..:||   
  Fly   376 MSANKLKKRVGIFNIFGSN--KNSLTADGQKEDFSDLPPNQRRKKL----------QAKIAELTQ 428

  Fly   335 DVHQEYPQTNSLKKNT---STLSSVSSRASVKSEIATTQSSVTTSEAKTSAAVAGAATATAAATA 396
            ::.||....:.|.|..   ...||:.:..:|:.::..::..:...:............|:...||
  Fly   429 NIAQETKARDGLMKMKIVYEANSSLGNPMTVEGQLNESEHKLEKLKVDLKKYQGFLEKASQVPTA 493

  Fly   397 ASAASNRNSSVTNG-------NGKVDANPFDEEEEWDES---------DNVL-VDNGE------- 437
            .|:.....:.:.||       ||..|.:..|.:::.|::         |||. :.||.       
  Fly   494 TSSPQASRNQLQNGHRTSRHSNGSADDHHDDGDDQPDDAGSLSRSDSEDNVAQIQNGHNNNNNGS 558

  Fly   438 --------------PGV------------------------PV---KALYDYEGAESDELTFKQG 461
                          ||.                        ||   :|||.:|.:....:...:|
  Fly   559 ASPESGLGTSHTSLPGSGQGSANENAIGEDTYYETEVETLNPVGKCRALYPFEASSEGSIPMSEG 623

  Fly   462 DVFEKLEDEDEQGWCKGR----MNG-RVGLYPANYVE 493
            :..:.:|.:...||.:.|    .|| ..|..|.:|:|
  Fly   624 EELQVIEIDQGDGWTRVRRENNSNGWDEGFVPTSYIE 660

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SyndNP_001262786.1 F-BAR_PACSIN 17..272 CDD:153339 56/301 (19%)
SH3_PACSIN 441..493 CDD:212777 16/59 (27%)
Cip4NP_001097501.1 F-BAR_CIP4-like 69..319 CDD:153337 52/265 (20%)
HR1_CIP4-like 412..488 CDD:212009 11/85 (13%)
SH3_CIP4-like 603..661 CDD:212844 15/58 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2056
SonicParanoid 00.000 Not matched by this tool.
21.940

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