DRSC/TRiP Functional Genomics Resources

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Protein Alignment Synd and CG8176

DIOPT Version :10

Sequence 1:NP_001262786.1 Gene:Synd / 42467 FlyBaseID:FBgn0053094 Length:495 Species:Drosophila melanogaster
Sequence 2:NP_001097723.1 Gene:CG8176 / 261329 FlyBaseID:FBgn0037702 Length:1220 Species:Drosophila melanogaster


Alignment Length:541 Identity:102/541 - (18%)
Similarity:192/541 - (35%) Gaps:164/541 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 SDSFWEPGN--YKRTTKRIEDGYKLCNDLQQLIQERADIEKGYAKSLRTWSKKWGELIEKGPEYG 76
            :|.||...|  |......::.|.....:|.:.::|:::||:..:|.:...:.|.|.|      ..
  Fly     6 NDYFWGEKNNGYDVLYHNMKFGLIASKELSEFLREKSNIEEQNSKMMSKLAHKAGTL------NS 64

  Fly    77 TTEAAWKGVLTESERISDVHMKIKDNLCNDVNSQIKTWQKENYHHTLMQIKERKDLEDLFKKAQK 141
            |....|..:.|.:|::|.:|:::...|...|....|...:.:..|..::.:|.:.||.:      
  Fly    65 TFAPVWTILRTSAEKLSTLHLQMVQKLTELVKDVAKYADELHKKHKSVKEEESQTLECV------ 123

  Fly   142 PWAKLLAKVEKAKADYHSACKTERSATNQERNANADSSLSPDQVKK---MHDRVQKTKDQVQKCR 203
                             .|.:|...|..:.|:..|......::::|   .|...:|.:.:::|.:
  Fly   124 -----------------QAIQTSTVAVQKLRDLYASKVQELEKLRKDNGSHKDAEKLESKLKKLQ 171

  Fly   204 EKYEQAIAEITKYNSV---YIEDMTSVFEKCQTFEKTRLQFFKEILF--------------NVHS 251
            |:|:   |.:.|:|.:   :...||...::.|..|:..|:..||.|.              .|||
  Fly   172 EEYK---ALLDKHNPIKNEFERRMTQTCKRFQEIEEVHLRQMKEFLSTYLEMLQNNHDMVGQVHS 233

  Fly   252 CLDLTKV-QSLPQIYEEF---SHTINNADQQKDLKWWSNNHGINM--------AMNWPSFVEYTE 304
            ......| .|:.::.|:|   .:|.....:..:|::.:.:.|..:        |.|..|......
  Fly   234 DFKRQFVDMSVDKLLEQFVLNKYTGLEKPEMPELEYVALSSGSRLQQPQVSASASNSNSATSIQA 298

  Fly   305 EFR-------------------------DIAKGNKSKEALPAA--PI--TLINQRPVAEDV---- 336
            ..|                         .:..|:.:..::|.|  ||  .:.:.||.:.|:    
  Fly   299 ALRAGNAATTASGSAVSMDQRGDALAAISLGSGSAASGSIPFAEDPILGAMGSPRPTSPDMLAGA 363

  Fly   337 ----HQEYP---QTNSLKK--------------------------------NTSTLSSVSSRASV 362
                .|..|   .|:::|.                                .|:|.|:.|:..:.
  Fly   364 NASGIQSQPTGGATSTVKSLRSWFLPTAKQQPSAGAGNFGMAGSGSTNNTTTTTTASNNSNNLNT 428

  Fly   363 KSEIATT------------------QSSVTTSEAKTSAAVAGAATATAAATAASAASNRNSSVTN 409
            .:..|||                  .|..|:::.:|....|.|.|.||:|||.:|||        
  Fly   429 NNTTATTTTTTGTNNLTTNITKNSPNSEDTSNQDQTQQQPAEALTPTASATAIAAAS-------- 485

  Fly   410 GNGKVDANPFDEEEEWDESDN 430
            ..||...|....|::..:|.|
  Fly   486 APGKKQLNATTSEQQLSKSLN 506

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SyndNP_001262786.1 F-BAR_PACSIN 17..272 CDD:153339 55/280 (20%)
SH3_PACSIN 441..493 CDD:212777
CG8176NP_001097723.1 F-BAR_FCHO 11..269 CDD:153332 55/289 (19%)
PHA03307 731..>921 CDD:223039
AP_Syp1_like_MHD 928..1194 CDD:271171
Blue background indicates that the domain is not in the aligned region.

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