DRSC/TRiP Functional Genomics Resources

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Protein Alignment Synd and bzz1

DIOPT Version :10

Sequence 1:NP_001262786.1 Gene:Synd / 42467 FlyBaseID:FBgn0053094 Length:495 Species:Drosophila melanogaster
Sequence 2:NP_596017.1 Gene:bzz1 / 2539679 PomBaseID:SPBC12C2.05C Length:642 Species:Schizosaccharomyces pombe


Alignment Length:588 Identity:131/588 - (22%)
Similarity:214/588 - (36%) Gaps:147/588 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 NYKRTTKRIEDGYKLCNDLQQLIQERADIEKGYAKSLRTWSKKWGELIEK-----------GPEY 75
            ::|.....|.:|.|...|:|...:||:.|||.||:.|.:.|.|:||...:           ....
pombe    15 DFKVVDSWINNGAKWLEDIQLYYKERSSIEKEYAQKLASLSNKYGEKKSRKSSALSVGDTPAMSA 79

  Fly    76 GTTEAA----WKGVLTESERISDVHMKIKDNLCNDVNSQIKTWQKENYHHTLMQIKERKDLEDLF 136
            |:.|.|    |..:|.|..|.|..|.|:.|:...|:..::|  :.|::...|     ||..:||:
pombe    80 GSLECASLTTWSKILDELTRSSKTHQKLSDDYSLDIAEKLK--KLESHIEAL-----RKVYDDLY 137

  Fly   137 KKAQKPWAKLLAKVEKAKADYHSACKTERSATNQERNANADSSLSPDQVKKMHDRVQKTK----- 196
            ||.......||..|::||..||.||....||  :::|         |:.     |.|||:     
pombe   138 KKFSSEKETLLNSVKRAKVSYHEACDDLESA--RQKN---------DKY-----REQKTQRNLKL 186

  Fly   197 ---DQVQKCREKYEQAIAEITKYNS----VYIEDMTSVFEKCQTFEKTRLQFFKEI---LFNVHS 251
               |.:.| :.||   :..:..||:    .|.|.:.::....|...:.|:....||   .|::..
pombe   187 SESDMLDK-KNKY---LLRMLVYNAHKQKFYNETLPTLLNHMQVLNEYRVSNLNEIWCNSFSIEK 247

  Fly   252 CLDLTKVQSLPQIYEEFS-------------HTINNADQQKDLKW-----WSNN----------- 287
            .|..|..|...:|..|.:             |...|.....||.:     |.:.           
pombe   248 SLHDTLSQRTVEIQSEIAKNEPVLDSAMFGRHNSKNWALPADLHFEPSPIWHDTDALVVDGSCKN 312

  Fly   288 -------HGIN------------------MAMNWPSFVEYTEEFRDIAKGNKSKEALPAAPITLI 327
                   |..|                  :.::.|:....:.|.:..:...:.||.:..|.|..:
pombe   313 YLRNLLVHSKNDLGKQKGELVSLDSQLEGLRVDDPNSANQSFESKKASINLEGKELMVKARIEDL 377

  Fly   328 NQR-----PVAEDVHQ------------EYPQTNS--------LKKNTSTLSSVSSRASVKSEIA 367
            ..|     .||.::.:            :.|.:.|        |.|......:...:...:.|:.
pombe   378 EVRINKITSVANNLEEGGRFHDFKHVSFKLPTSCSYCREIIWGLSKRGCVCKNCGFKCHARCELL 442

  Fly   368 TTQSSVT-TSEAKTSAAVAGAATATAAATAASAASNRNSSVTNGNGKVDANPFDEEEEWDES-DN 430
            ...:... ..|.....||..:.|||....|::::||...|..|    ...:..|....:..| .|
pombe   443 VPANCKNGEPEVADDDAVDTSVTATDDFDASASSSNAYESYRN----TYTDDMDSSSIYQTSLSN 503

  Fly   431 VLVDNGEPGVPVK-----ALYDYEGAESDELTFKQGDVFEKLEDEDEQGWCKGRMNGRVGLYPAN 490
            |..:...|..|..     .|||:.|.....:|..:|..|..||.:|..||.:.:::|..||.||:
pombe   504 VKTEETTPAEPASKVDGVVLYDFTGEHEGVITASEGQEFTLLEPDDGSGWVRVKIDGTDGLIPAS 568

  Fly   491 YVE 493
            ||:
pombe   569 YVK 571

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SyndNP_001262786.1 F-BAR_PACSIN 17..272 CDD:153339 75/292 (26%)
SH3_PACSIN 441..493 CDD:212777 19/56 (34%)
bzz1NP_596017.1 FCH 6..107 CDD:214492 27/91 (30%)
C1_SpBZZ1-like 397..447 CDD:410374 5/49 (10%)
SH3_Bzz1_1 519..572 CDD:212845 19/53 (36%)
SH3 588..640 CDD:473055
Blue background indicates that the domain is not in the aligned region.

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