DRSC/TRiP Functional Genomics Resources

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Protein Alignment Synd and pacsin1

DIOPT Version :9

Sequence 1:NP_001262786.1 Gene:Synd / 42467 FlyBaseID:FBgn0053094 Length:495 Species:Drosophila melanogaster
Sequence 2:XP_002939011.2 Gene:pacsin1 / 100494558 XenbaseID:XB-GENE-494779 Length:446 Species:Xenopus tropicalis


Alignment Length:504 Identity:203/504 - (40%)
Similarity:296/504 - (58%) Gaps:69/504 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSHHSDDQL--LQAGSDSFWEPGNYKRTTKRIEDGYKLCNDLQQLIQERADIEKGYAKSLRTWSK 63
            ||...|:..  |:..:|||||.|:||||.|||:||::|||||...:|:||.|||.|::.|..|:|
 Frog     1 MSGSYDEMAVSLEDTTDSFWELGHYKRTVKRIDDGHRLCNDLMSCLQDRAKIEKAYSQQLTDWAK 65

  Fly    64 KWGELIEKGPEYGTTEAAWKGVLTESERISDVHMKIKDNLCNDVNSQIKTWQKENYHHTLM-QIK 127
            :|.:||||||:|||.|.||..:|||:|||.::|.::|::|.::...:::.||||:||..:| ..|
 Frog    66 RWRQLIEKGPQYGTLERAWGALLTEAERIGELHQEVKNHLVSEDMEKVRNWQKESYHKQMMGGFK 130

  Fly   128 ERKDLEDLFKKAQKPWAKLLAKVEKAKADYHSACKTERSATNQERNANADSSLSPDQVKKMHDRV 192
            |.::.|:.|:||||||||.:.:||.||..||.|||.|:.|:::|.:..||:|::.||::|:.|:|
 Frog   131 ESREAEEGFRKAQKPWAKKMKEVEAAKKTYHMACKEEKLASSREASGKADASVTADQLRKLQDKV 195

  Fly   193 QKTKDQVQKCREKYEQAIAEITKYNSVYIEDMTSVFEKCQTFEKTRLQFFKEILFNVHSCLDLTK 257
            :|.|..|||.:|:||:.:.:|.|:...|:|.|..|||:||..|:.||.|.||.|.::...|:|::
 Frog   196 EKCKQDVQKAQERYEKILDDIQKFTPQYMESMDLVFEQCQQMEEKRLVFLKEALLDIKHHLNLSE 260

  Fly   258 VQSLPQIYEEFSHTINNADQQKDLKWWSNNHGINMAMNWPSFVEYTEEF-RDIAKGNKSKEALPA 321
            ..|...:|:|...||.::|.|:||:|:...||..|.||||.|.|:..:. ..||:..|:|     
 Frog   261 SSSYAAVYQELEQTIQSSDVQEDLRWFRVYHGPGMHMNWPQFEEWNPDVTHTIARKEKTK----- 320

  Fly   322 APITLINQRPVAEDVHQEYPQTNSLKKNTSTLSSVSSRASVKSEIATTQSSVTTSEAKTSAAVAG 386
                                                     |:|.|...:...|:|..:.....|
 Frog   321 -----------------------------------------KTEGAVLTNVAVTTENSSQGGDRG 344

  Fly   387 AATA---TAAATA--ASAASNRNSSVTNGNGKVDANPFDEEEEWDESDNVLVDNGEPGVPVKALY 446
            :.::   |.|.||  :......:||....:....||||:||             |...|.|:|||
 Frog   345 SVSSYDRTQAYTADWSDDEGGNSSSYPTADSNGGANPFEEE-------------GALRVRVRALY 396

  Fly   447 DYEGAESDELTFKQGDVFEKLEDEDEQGWCKGRM-NGRVGLYPANYVET 494
            ||||.|.|||:||.|:...|||||||||||:|:: :||.|||||||||:
 Frog   397 DYEGQEQDELSFKAGEELTKLEDEDEQGWCRGQLDSGRQGLYPANYVES 445

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SyndNP_001262786.1 F-BAR_PACSIN 17..272 CDD:153339 119/255 (47%)
SH3_PACSIN 441..493 CDD:212777 36/52 (69%)
pacsin1XP_002939011.2 F-BAR_PACSIN1 19..276 CDD:153364 120/256 (47%)
SH3_PACSIN1-2 390..445 CDD:212931 38/54 (70%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 230 1.000 Domainoid score I2400
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 423 1.000 Inparanoid score I1741
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D432948at33208
OrthoFinder 1 1.000 - - FOG0001073
OrthoInspector 1 1.000 - - otm47852
Panther 1 1.100 - - O PTHR23065
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X728
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
88.160

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