DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpS20 and RSM10

DIOPT Version :9

Sequence 1:NP_524421.1 Gene:RpS20 / 42464 FlyBaseID:FBgn0019936 Length:120 Species:Drosophila melanogaster
Sequence 2:NP_010326.1 Gene:RSM10 / 851611 SGDID:S000002448 Length:203 Species:Saccharomyces cerevisiae


Alignment Length:38 Identity:14/38 - (36%)
Similarity:22/38 - (57%) Gaps:1/38 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly    54 GPVRMPTKTLRITTRKTPCGEGSKTWDRFQMRIHKRII 91
            ||..:||:..|.|..|:|... :|:.:.|:...|||:|
Yeast    75 GPKPLPTRRERWTVIKSPFVH-AKSKENFERHTHKRLI 111

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpS20NP_524421.1 Ribosomal_S10 6..118 CDD:412302 14/38 (37%)
RSM10NP_010326.1 Ribosomal_S10 45..141 CDD:395267 14/38 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0051
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100367
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.710

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