DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpS20 and AT3G45030

DIOPT Version :9

Sequence 1:NP_524421.1 Gene:RpS20 / 42464 FlyBaseID:FBgn0019936 Length:120 Species:Drosophila melanogaster
Sequence 2:NP_190089.2 Gene:AT3G45030 / 823638 AraportID:AT3G45030 Length:124 Species:Arabidopsis thaliana


Alignment Length:113 Identity:74/113 - (65%)
Similarity:95/113 - (84%) Gaps:4/113 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 IEKPHVGDSASVHRIRITLTSRNVRSLENVCRDLINGAKNQNLRVKGPVRMPTKTLRITTRKTPC 72
            :|:|    ...:|:|||||:|:||::||.||.||:.|||::.||||||||||||.|:|||||.||
plant    15 LEEP----LEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTRKAPC 75

  Fly    73 GEGSKTWDRFQMRIHKRIIDLHSPSEIVKKITSINIEPGVEVEVTIAN 120
            |||:.|||||::|:|||:|||.|..::||:||||.||||||||||||:
plant    76 GEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 123

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpS20NP_524421.1 Ribosomal_S10 6..118 CDD:412302 71/109 (65%)
AT3G45030NP_190089.2 Ribosomal_S10 9..121 CDD:412302 71/109 (65%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 150 1.000 Domainoid score I1417
eggNOG 1 0.900 - - E1_COG0051
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H37417
Inparanoid 1 1.050 160 1.000 Inparanoid score I1635
OMA 1 1.010 - - QHG60602
OrthoDB 1 1.010 - - D1454256at2759
OrthoFinder 1 1.000 - - FOG0001389
OrthoInspector 1 1.000 - - otm3285
orthoMCL 1 0.900 - - OOG6_100367
Panther 1 1.100 - - O PTHR11700
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X970
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1413.840

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