DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpS20 and mrps10

DIOPT Version :9

Sequence 1:NP_524421.1 Gene:RpS20 / 42464 FlyBaseID:FBgn0019936 Length:120 Species:Drosophila melanogaster
Sequence 2:XP_031746338.1 Gene:mrps10 / 549745 XenbaseID:XB-GENE-6070079 Length:209 Species:Xenopus tropicalis


Alignment Length:129 Identity:27/129 - (20%)
Similarity:51/129 - (39%) Gaps:28/129 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 SASVH------RIRITLTSRN-----VRSLENV--CRD----------LINGAKNQNLRVKGPVR 57
            ||.:|      |:|..:::.:     .:.:|.:  |.|          .:..||...:.|: .|.
 Frog    54 SAGIHSEAFQSRVRNLISATDEPDTLYKKIEVLAKCHDKTVLDSYEYFAVLAAKELGINVE-KVH 117

  Fly    58 MPTKTLRITTRKTPCGEGSKTWDRFQMRIHKRIIDLH----SPSEIVKKITSINIEPGVEVEVT 117
            .|.|.:...|.........|...:::||.|.|..:|.    |.:::..:....|:..||.:|:|
 Frog   118 EPKKKIERFTLLKSVHIFKKHRVQYEMRTHYRCFELRHLTGSTADVYLEYIQRNLPEGVALEIT 181

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpS20NP_524421.1 Ribosomal_S10 6..118 CDD:412302 27/129 (21%)
mrps10XP_031746338.1 Ribosomal_S10 88..181 CDD:395267 20/93 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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