DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpS20 and rbm6

DIOPT Version :9

Sequence 1:NP_524421.1 Gene:RpS20 / 42464 FlyBaseID:FBgn0019936 Length:120 Species:Drosophila melanogaster
Sequence 2:XP_012819996.2 Gene:rbm6 / 448685 XenbaseID:XB-GENE-493947 Length:130 Species:Xenopus tropicalis


Alignment Length:88 Identity:77/88 - (87%)
Similarity:83/88 - (94%) Gaps:0/88 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 SLENVCRDLINGAKNQNLRVKGPVRMPTKTLRITTRKTPCGEGSKTWDRFQMRIHKRIIDLHSPS 97
            ||..||.|||.|||.:||:||||||||||||||||||||||||||||||||||||||:|||||||
 Frog    42 SLFAVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPS 106

  Fly    98 EIVKKITSINIEPGVEVEVTIAN 120
            ||||:||||:||||||||||||:
 Frog   107 EIVKQITSISIEPGVEVEVTIAD 129

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpS20NP_524421.1 Ribosomal_S10 6..118 CDD:412302 74/84 (88%)
rbm6XP_012819996.2 Ribosomal_S10 <42..127 CDD:412302 74/84 (88%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 155 1.000 Domainoid score I4198
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H37417
Inparanoid 1 1.050 158 1.000 Inparanoid score I4172
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1454256at2759
OrthoFinder 1 1.000 - - FOG0001389
OrthoInspector 1 1.000 - - oto105280
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1236
SonicParanoid 1 1.000 - - X970
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
88.090

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