Protein Alignment Syp and Dnd1

DIOPT Version :9

• Sequence 1: NP_001262777.1
• Gene: Syp / 42460
• FlyBaseID: FBgn0038826
• Length: 761
• Species: Drosophila melanogaster
• Sequence 2: NP_001102849.1
• Gene: Dnd1 / 679841
• RGDID: 1583648
• Length: 352
• Species: Rattus norvegicus
• Alignment Length: 234
• Identity: 78/234 - (33%)
• Similarity: 129/234 - (55%)
• Gaps: 12/234 - (5%)

  Fly   174 LERTGYTLDVTTGQRKYGGPPPHWEGNVPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLM 238
            :..||..|....||||||||||.|.|:.|.:|.|||.|::|:|:||.:|||||:..|.:::.|||
  Rat    26 VRETGIRLVQVNGQRKYGGPPPGWVGSPPPSGSEVFIGRLPQDVYEHQLIPLFQRVGRLYEFRLM 90

  Fly   239 MDPMTGTNRGYAFVTFTNREAAVNAVRQLNDFEIRTGKKIGVTISFNNHRLFVGNIPKNRDRDEL 303
            | ..:|.|||:|:..:::|..|..|:..|::.::|...::.|..|.....|.|..:|.:.:|..|
  Rat    91 M-TFSGLNRGFAYARYSSRRGAQAAIATLHNHQLRPSCQLLVCRSTEKCELTVDGLPLSLNRRAL 154

  Fly   304 IEEFSKHAPGLYEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWAD 368
            :.......|.|.|.::..||......  ...|::.:|:||::||:.|..|:.::.|..:.|:|..
  Rat   155 LLALQPLGPCLQETLLLPSPGSAPSQ--IALLKFSTHRAAAMAKKALVEGQSRLCGEQVAVEWLK 217

  Fly   369 PQ-EEPDEQTMSKVKVLYVRNLTQDVSE-----DKLKEQ 401
            |. ::...|.::...:.::|   .|||:     |||..|
  Rat   218 PDLKQHFRQQLAGPSLRFLR---PDVSQLAQTRDKLGSQ 253

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Syp	NP_001262777.1	RRM1_hnRNPR_like	205..283	CDD:240695	30/77 (39%)
		RRM2_hnRNPR_like	286..367	CDD:240696	20/80 (25%)
		RRM3_hnRNPR_like	381..452	CDD:240697	8/26 (31%)
Dnd1	NP_001102849.1	hnRNP-R-Q	18..>219	CDD:273732	68/195 (35%)
		DSRM_DND1	254..333	CDD:380745	78/234 (33%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG0117
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1384330at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	4	3.820