Protein Alignment Syp and CG34354

DIOPT Version :10

• Sequence 1: NP_001262777.1
• Gene: Syp / 42460
• FlyBaseID: FBgn0038826
• Length: 761
• Species: Drosophila melanogaster
• Sequence 2: NP_001097953.2
• Gene: CG34354 / 5740528
• FlyBaseID: FBgn0085383
• Length: 550
• Species: Drosophila melanogaster
• Alignment Length: 552
• Identity: 97/552 - (17%)
• Similarity: 164/552 - (29%)
• Gaps: 213/552 - (38%)

  Fly   156 VAAPATVKGPDEDKIKKIL----------ERTGYTLDVTTGQRKYGGPPPH-------------- 196
            :.||....||.:....|:|          ........||....::.|...|
  Fly    16 MGAPQITMGPHKPPETKLLAIHPAAAAAAAAQQQQQSVTAAHLQHNGQQQHSQQQQQQQMSQQQQ 80

  Fly   197 -WEGNVPGNGCE-----VFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFT 255
             .:..:.||..:     :|.|.:..::...:|...|...|.|.|.|::.||.|..::||.||:|.
  Fly    81 QQQQQLVGNNSKPEQFHIFVGDLSAEIETQQLKDAFTPFGEISDCRVVRDPQTLKSKGYGFVSFV 145

  Fly   256 NREAAVNAVRQLN-----DFEIRTG---KKIGVTISFNNHRLFVGNIPKNRDRDELIEEFSKHAP 312
            .:..|..|:..:|     ...|||.   :|...|.:..|.:      |...|
  Fly   146 KKSEAETAITAMNGQWLGSRSIRTNWATRKPPATKADMNAK------PLTFD------------- 191

  Fly   313 GLYEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDII---VDWADPQEEPD 374
               ||...|||.:                                  |.:.   ::.|
  Fly   192 ---EVYNQSSPTN----------------------------------CTVYCGGINGA------- 212

  Fly   375 EQTMSKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERVKKIKD--YAFIHFEDRDSAVEAMRGLNG 437
                          |:..::|:.|::.|..||.::.::..||  |||:.|..:::|..|:..:|.
  Fly   213 --------------LSGFLNEEILQKTFSPYGTIQEIRVFKDKGYAFVRFSTKEAATHAIVAVNN 263

  Fly   438 KEIGASNIEVSLAKPPSDKKKKEEILRARERRMMQMMQARP----------GIVGFETLSPYRNL 492
            .||....::.:..|...|......|...      .:.|..|          ...|.:....:...
  Fly   264 TEINQQPVKCAWGKESGDPNHMSAIAGG------ALAQGFPFGSAAAAAAAAAYGQQVAGYWYPP 322

  Fly   493 SPTHPSIMSLTPMRPGARMPLRTPIPREYDYFYDFFGFSDYRQGGSFGNNVSYYDDMYRWIDGDY 557
            :||:|:....:.::||.                    |....||.::|....|..
  Fly   323 APTYPAAAPASALQPGQ--------------------FLQGMQGFTYGQFAGYQQ---------- 357

  Fly   558 NYYDYPNGGGGGSGGGGGSVSGGTVLPLSAGGSQNSPMASGQRSARGSASGPSASPSLMGVGRGH 622
                            .|.:..|..||    |:..|.....|.::..:|:.|..:.|:
  Fly   358 ----------------AGYMGMGVQLP----GTWQSVPPQPQLASAAAATAPQITQSV------- 395

  Fly   623 GITVPRGRVVGQRGSISRLGAQTVPQAAGAAA 654
                         ||       .:|||||..|
  Fly   396 -------------GS-------ALPQAAGVVA 407

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Syp	NP_001262777.1	NURR_Syncrip-like	68..150	CDD:410953
		hnRNP-R-Q	153..>563	CDD:273732	79/459 (17%)
CG34354	NP_001097953.2	PABP-1234	<90..420	CDD:130689	85/478 (18%)
		RRM2_TIA1_like	97..171	CDD:409789	22/73 (30%)
		RRM3_TIA1_like	202..276	CDD:409790	19/94 (20%)