DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Syp and CG34354

DIOPT Version :9

Sequence 1:NP_001262777.1 Gene:Syp / 42460 FlyBaseID:FBgn0038826 Length:761 Species:Drosophila melanogaster
Sequence 2:NP_001097953.2 Gene:CG34354 / 5740528 FlyBaseID:FBgn0085383 Length:550 Species:Drosophila melanogaster


Alignment Length:552 Identity:97/552 - (17%)
Similarity:164/552 - (29%) Gaps:213/552 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly   156 VAAPATVKGPDEDKIKKIL----------ERTGYTLDVTTGQRKYGGPPPH-------------- 196
            :.||....||.:....|:|          ........||....::.|...|              
  Fly    16 MGAPQITMGPHKPPETKLLAIHPAAAAAAAAQQQQQSVTAAHLQHNGQQQHSQQQQQQQMSQQQQ 80

  Fly   197 -WEGNVPGNGCE-----VFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFT 255
             .:..:.||..:     :|.|.:..::...:|...|...|.|.|.|::.||.|..::||.||:|.
  Fly    81 QQQQQLVGNNSKPEQFHIFVGDLSAEIETQQLKDAFTPFGEISDCRVVRDPQTLKSKGYGFVSFV 145

  Fly   256 NREAAVNAVRQLN-----DFEIRTG---KKIGVTISFNNHRLFVGNIPKNRDRDELIEEFSKHAP 312
            .:..|..|:..:|     ...|||.   :|...|.:..|.:      |...|             
  Fly   146 KKSEAETAITAMNGQWLGSRSIRTNWATRKPPATKADMNAK------PLTFD------------- 191

  Fly   313 GLYEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDII---VDWADPQEEPD 374
               ||...|||.:                                  |.:.   ::.|       
  Fly   192 ---EVYNQSSPTN----------------------------------CTVYCGGINGA------- 212

  Fly   375 EQTMSKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERVKKIKD--YAFIHFEDRDSAVEAMRGLNG 437
                          |:..::|:.|::.|..||.::.::..||  |||:.|..:::|..|:..:|.
  Fly   213 --------------LSGFLNEEILQKTFSPYGTIQEIRVFKDKGYAFVRFSTKEAATHAIVAVNN 263

  Fly   438 KEIGASNIEVSLAKPPSDKKKKEEILRARERRMMQMMQARP----------GIVGFETLSPYRNL 492
            .||....::.:..|...|......|...      .:.|..|          ...|.:....:...
  Fly   264 TEINQQPVKCAWGKESGDPNHMSAIAGG------ALAQGFPFGSAAAAAAAAAYGQQVAGYWYPP 322

  Fly   493 SPTHPSIMSLTPMRPGARMPLRTPIPREYDYFYDFFGFSDYRQGGSFGNNVSYYDDMYRWIDGDY 557
            :||:|:....:.::||.                    |....||.::|....|..          
  Fly   323 APTYPAAAPASALQPGQ--------------------FLQGMQGFTYGQFAGYQQ---------- 357

  Fly   558 NYYDYPNGGGGGSGGGGGSVSGGTVLPLSAGGSQNSPMASGQRSARGSASGPSASPSLMGVGRGH 622
                            .|.:..|..||    |:..|.....|.::..:|:.|..:.|:       
  Fly   358 ----------------AGYMGMGVQLP----GTWQSVPPQPQLASAAAATAPQITQSV------- 395

  Fly   623 GITVPRGRVVGQRGSISRLGAQTVPQAAGAAA 654
                         ||       .:|||||..|
  Fly   396 -------------GS-------ALPQAAGVVA 407

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SypNP_001262777.1 RRM1_hnRNPR_like 205..283 CDD:240695 24/90 (27%)
RRM2_hnRNPR_like 286..367 CDD:240696 9/83 (11%)
RRM3_hnRNPR_like 381..452 CDD:240697 17/72 (24%)
CG34354NP_001097953.2 RRM2_TIA1_like 97..171 CDD:240799 22/73 (30%)
RRM3_TIA1_like 202..278 CDD:240800 19/96 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45464015
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

Return to query results.
Submit another query.