| Sequence 1: | NP_001262777.1 | Gene: | Syp / 42460 | FlyBaseID: | FBgn0038826 | Length: | 761 | Species: | Drosophila melanogaster |
|---|---|---|---|---|---|---|---|---|---|
| Sequence 2: | NP_062640.2 | Gene: | Syncrip / 56403 | MGIID: | 1891690 | Length: | 623 | Species: | Mus musculus |
| Alignment Length: | 737 | Identity: | 330/737 - (44%) |
|---|---|---|---|
| Similarity: | 412/737 - (55%) | Gaps: | 151/737 - (20%) |
- Green bases have known domain annotations that are detailed below.
|
Fly 46 GNGELLDDINQKADDRGDGERTEDYPKLLEYGLDKKVAGKLDEIYKTGKLAHAELDERALDALKE 110
Fly 111 FPVDGALNVLGQFLESNLEHVSNKSAYLCGVMKTYRQKSRASQQGVAAPATVKGPDEDKIKKILE 175
Fly 176 RTGYTLDVTTGQRKYGGPPPH--WEGNVPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLM 238
Fly 239 MDPMTGTNRGYAFVTFTNREAAVNAVRQLNDFEIRTGKKIGVTISFNNHRLFVGNIPKNRDRDEL 303
Fly 304 IEEFSKHAPGLYEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWAD 368
Fly 369 PQEEPDEQTMSKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERVKKIKDYAFIHFEDRDSAVEAMR 433
Fly 434 GLNGKEIGASNIEVSLAKPPSDKKKKEEILRARERRMMQMMQARPGIVGFETLSPYRNLSPTHPS 498
Fly 499 IMSLTPMRP-------GARMPLRTPIPREYDY--FYDFFGFS--DYRQGGSFGNNVSYYDDMYRW 552
Fly 553 IDGDYNYYDYPNGGGGGSGGGGGSVSGGTVLPLSAGGSQNSPMASGQRSARGSASGPSASPSLMG 617
Fly 618 VGRGHGITVPRGRV-VGQRGSISRLGAQTVPQAAGAAAAAGQAAAAVAQRGATGQGAPAATGGFR 681
Fly 682 GVLPTRPSARGTQHVKPLQNLPVVGKRKFDGGHQNPADVKRRYPSGLIGNGGSWGSLPLPQQPL- 745
Fly 746 -----GTNG-----EQWYMDTF 757 |
| Gene | Sequence | Domain | Region | External ID | Identity |
|---|---|---|---|---|---|
| Syp | NP_001262777.1 | RRM1_hnRNPR_like | 205..283 | CDD:240695 | 52/77 (68%) |
| RRM2_hnRNPR_like | 286..367 | CDD:240696 | 48/80 (60%) | ||
| RRM3_hnRNPR_like | 381..452 | CDD:240697 | 41/70 (59%) | ||
| Syncrip | NP_062640.2 | hnRNP_Q_AcD | 34..103 | CDD:375786 | 47/68 (69%) |
| hnRNP-R-Q | 103..615 | CDD:273732 | 271/632 (43%) | ||
| Interaction with APOBEC1. /evidence=ECO:0000250 | 400..561 | 64/248 (26%) | |||
| 8 X 3 AA repeats of R-G-G | 448..559 | 46/176 (26%) | |||
| 3 X 4 AA repeats of Y-Y-G-Y | 460..488 | 12/42 (29%) | |||
| Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 497..623 | 56/202 (28%) | |||
| Interaction with SMN. /evidence=ECO:0000250 | 518..549 | 12/41 (29%) | |||
| Bipartite nuclear localization signal. /evidence=ECO:0000255 | 564..578 | 8/15 (53%) |
| Tool | Simple Score | Weighted Score | Original Tool Information | |||
|---|---|---|---|---|---|---|
| BLAST Result | Score | Score Type | Cluster ID | |||
| Compara | 0 | 0.000 | Not matched by this tool. | |||
| Domainoid | 1 | 1.000 | 102 | 1.000 | Domainoid score | I6833 |
| eggNOG | 1 | 0.900 | - | - | E1_KOG0117 | |
| Hieranoid | 1 | 1.000 | - | - | ||
| Homologene | 0 | 0.000 | Not matched by this tool. | |||
| Inparanoid | 1 | 1.050 | 549 | 1.000 | Inparanoid score | I1136 |
| Isobase | 0 | 0.000 | Not matched by this tool. | |||
| OMA | 1 | 1.010 | - | - | QHG49453 | |
| OrthoDB | 1 | 1.010 | - | - | D1384330at2759 | |
| OrthoFinder | 1 | 1.000 | - | - | FOG0000581 | |
| OrthoInspector | 1 | 1.000 | - | - | otm43304 | |
| orthoMCL | 1 | 0.900 | - | - | OOG6_104511 | |
| Panther | 1 | 1.100 | - | - | O | PTHR21245 |
| Phylome | 1 | 0.910 | - | - | ||
| RoundUp | 1 | 1.030 | - | avgDist | Average_Evolutionary_Distance | R9312 |
| SonicParanoid | 1 | 1.000 | - | - | X331 | |
| SwiftOrtho | 1 | 1.000 | - | - | ||
| TreeFam | 1 | 0.960 | - | - | ||
| 15 | 14.870 | |||||