DRSC/TRiP Functional Genomics Resources

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Protein Alignment Syp and RBM47

DIOPT Version :9

Sequence 1:NP_001262777.1 Gene:Syp / 42460 FlyBaseID:FBgn0038826 Length:761 Species:Drosophila melanogaster
Sequence 2:NP_001092104.1 Gene:RBM47 / 54502 HGNCID:30358 Length:593 Species:Homo sapiens


Alignment Length:645 Identity:234/645 - (36%)
Similarity:323/645 - (50%) Gaps:126/645 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   151 ASQQGVAAPATVKG-PDEDKIKKILERTGYTLDVTTGQRKYGGPPPHWEGNVPGNGCEVFCGKIP 214
            |:......|..|.| |:|..:..::|||||::....||||||||||.|||..|..|||||.||||
Human    15 AAGSSAKVPEGVAGAPNEAALLALMERTGYSMVQENGQRKYGGPPPGWEGPHPQRGCEVFVGKIP 79

  Fly   215 KDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAAVNAVRQLNDFEIRTGKKIG 279
            :|:|||||:|:||..|.|::|||||| ..|.|||||||.:.::..|..|||:||::|||.|:.:|
Human    80 RDVYEDELVPVFEAVGRIYELRLMMD-FDGKNRGYAFVMYCHKHEAKRAVRELNNYEIRPGRLLG 143

  Fly   280 VTISFNNHRLFVGNIPKNRDRDELIEEFSKHAPGLYEVIIYSSPDDKKKNRGFCFLEYESHKAAS 344
            |..|.:|.|||:|.|||.:.|:|::||.:|...|:.:||:|:|..||.|||||.|:|||||:||:
Human   144 VCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAA 208

  Fly   345 LAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQTMSKVKVLYVRNLTQDVSEDKLKEQFEQY--GK 407
            :|:|:|..|||::||..|.||||:|:.:.||..|..||:||||||..:.:||.:|:.|.|:  |.
Human   209 MARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGC 273

  Fly   408 VERVKKIKDYAFIHFEDRDSAVEAMRGLNGKEIGASNIEVSLAKPPSDKKKKEEILRARERRMMQ 472
            |||||||:||||:||..|:.||.||..|||.|:..|.:||:||| |.||::.....:|       
Human   274 VERVKKIRDYAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAK-PVDKEQYSRYQKA------- 330

  Fly   473 MMQARPGIVGFETLSPYRNLSPTHPSIMSLTPMRPGARMPLRTPIPREYDYFYDFFGFSDYRQGG 537
               ||.|                            ||....:.|   .|.|..|.:         
Human   331 ---ARGG----------------------------GAAEAAQQP---SYVYSCDPY--------- 352

  Fly   538 SFGNNVSYYDDMYRWIDGDYNYYDYPNGG--GGGSGGGG-------GSVSGGTVLPLSAGGSQNS 593
                .::||...|..:.|....|....|.  |.|.|..|       ||..||    .|||....|
Human   353 ----TLAYYGYPYNALIGPNRDYFVKAGSIRGRGRGAAGNRAPGPRGSYLGG----YSAGRGIYS 409

  Fly   594 PM--ASGQRSARG-----SASGPSASP--------SLMGVGRGHGI--------TVPRGRVVGQR 635
            ..  ..|::..:|     :...|:.:|        ::..:|..:.:        .:..|::....
Human   410 RYHEGKGKQQEKGYELVPNLEIPTVNPVAIKPGTVAIPAIGAQYSMFPAAPAPKMIEDGKIHTVE 474

  Fly   636 GSISRLGAQTVP-QAAGAAAAAGQAAAAVAQRGATG---QGAPAA-------------TGGFRGV 683
            ..||.:..|..| .||.|||||..|||||....:|.   ||.|..             |.|..|.
Human   475 HMISPIAVQPDPASAAAAAAAAAAAAAAVIPTVSTPPPFQGRPITPVYTVAPNVQRIPTAGIYGA 539

  Fly   684 LPTRPSARGTQHVKPLQNLPVVGKRKFDG--GHQNPADVKRRYPSGLIGNGGSWGSLPLP 741
            .....:|..|..:..||.........:.|  |:     :.:.:|:..|       .:|:|
Human   540 SYVPFAAPATATIATLQKNAAAAAAMYGGYAGY-----IPQAFPAAAI-------QVPIP 587

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SypNP_001262777.1 RRM1_hnRNPR_like 205..283 CDD:240695 46/77 (60%)
RRM2_hnRNPR_like 286..367 CDD:240696 44/80 (55%)
RRM3_hnRNPR_like 381..452 CDD:240697 41/72 (57%)
RBM47NP_001092104.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..25 2/9 (22%)
hnRNP-R-Q 21..593 CDD:273732 233/639 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0117
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1384330at2759
OrthoFinder 1 1.000 - - FOG0000581
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X331
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
54.820

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