DRSC/TRiP Functional Genomics Resources

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Protein Alignment Syp and Rb97D

DIOPT Version :10

Sequence 1:NP_001262777.1 Gene:Syp / 42460 FlyBaseID:FBgn0038826 Length:761 Species:Drosophila melanogaster
Sequence 2:NP_524520.1 Gene:Rb97D / 43231 FlyBaseID:FBgn0004903 Length:471 Species:Drosophila melanogaster


Alignment Length:379 Identity:81/379 - (21%)
Similarity:128/379 - (33%) Gaps:143/379 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   206 CE------VFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAAVNAV 264
            ||      :|.|.:.....|:.|...:...|.:.|:.:|.|..|..:||:.|:|:|.        
  Fly    26 CELEHLRKLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTK-------- 82

  Fly   265 RQLNDFEIRTGKKIGVTISFNNHRLFVGNIPKNRDRDELIEEFSKHAPGLYEVIIYSSPDDKKKN 329
                                   .|.|....:||..                 ||    |.|...
  Fly    83 -----------------------SLMVDRAQENRPH-----------------II----DGKTVE 103

  Fly   330 RGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQTMSKVKVLYVRNLTQDVS 394
                            |||.|                ..|:.|..|..:| ||.|:|..|..:..
  Fly   104 ----------------AKRAL----------------PRPERESRETNIS-VKKLFVGGLKDNHD 135

  Fly   395 EDKLKEQFEQYGKVERVKKIKD--------YAFIHFEDRDSAVEAMRGLNGKEIGASNIEVSLAK 451
            |:.|:|.|.|:|.|..||.:.|        :||:.|:|.|:..:|   :..|:.....:.|.:.|
  Fly   136 EECLREYFLQFGNVVSVKLLTDKTTGKRRGFAFVEFDDYDAVDKA---ILKKQHAIKYVHVDVKK 197

  Fly   452 P--PSDKKKKEE----------ILRARERRM----------MQMMQARPGIVGFETLSPYRNLSP 494
            .  ..|||:|::          .|..::::.          ||....||.:...:.:.||:...|
  Fly   198 SIYNLDKKEKQQPGGLANAIKPSLNQQQQQQGGGQQPPNGNMQAPSFRPPVPPQQAMGPYQQQPP 262

  Fly   495 THPSIMSLTPMR------PGARMP--LRTPIPREYDYFYDFFGFSDY---RQGG 537
              |:.||..|..      |...||  .:.|.|::.:      |:..|   :|.|
  Fly   263 --PAPMSAPPPNFNYWGPPPPAMPPYYQQPPPQQMN------GWGPYPPPQQNG 308

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SypNP_001262777.1 NURR_Syncrip-like 68..150 CDD:410953
hnRNP-R-Q 153..>563 CDD:273732 81/379 (21%)
Rb97DNP_524520.1 RRM2_hnRNPA_like 124..196 CDD:409766 21/74 (28%)
RRM_SF 33..110 CDD:473069 26/160 (16%)
Blue background indicates that the domain is not in the aligned region.

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