Protein Alignment Syp and sqd

DIOPT Version :9

• Sequence 1: NP_001262777.1
• Gene: Syp / 42460
• FlyBaseID: FBgn0038826
• Length: 761
• Species: Drosophila melanogaster
• Sequence 2: NP_731825.1
• Gene: sqd / 41666
• FlyBaseID: FBgn0263396
• Length: 344
• Species: Drosophila melanogaster
• Alignment Length: 423
• Identity: 96/423 - (22%)
• Similarity: 135/423 - (31%)
• Gaps: 168/423 - (39%)

  Fly   207 EVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAAVNAVRQLNDFE 271
            ::|.|.:..:..|.||...|...|.|..:.:..||.||.:||:||:.|||.||
  Fly    57 KLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEA------------ 109

  Fly   272 IRTGKKIGVTISFNNHRLFVGNIPKNRDRDELIEEFSKHAPGLYEVIIYSSPDDKKKNRGFCFLE 336
                                  |.|....||       |       ||.|...|.||
  Fly   110 ----------------------IDKVSAADE-------H-------IINSKKVDPKK-------- 130

  Fly   337 YESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQTMSKVKVLYVRNLTQDVSEDKLKEQ 401
                     ||.|.|.                               ::|..||.::|::::|..
  Fly   131 ---------AKARHGK-------------------------------IFVGGLTTEISDEEIKTY 155

  Fly   402 FEQYGKVERVK--------KIKDYAFIHFEDRDSAVEAMRGLNGKEIGASNIEVSLAKPPSDKKK 458
            |.|:|.:..|:        :.|.:.||.| |.:..|..:.....::|....::|..|.|..
  Fly   156 FGQFGNIVEVEMPFDKQKSQRKGFCFITF-DSEQVVTDLLKTPKQKIAGKEVDVKRATPKP---- 215

  Fly   459 KEEILRARERRMMQMMQARP------GIVGFETLSPYRNLSPTHPSIMSLTPMRPGARMPLRTPI 517
                    |.:||..|:..|      |..|:.....|.|
  Fly   216 --------ENQMMGGMRGGPRGGMRGGRGGYGGRGGYNN-------------------------- 246

  Fly   518 PREYDYFYDFFGFSDYRQGGSFGNNVSYYDDMYRWIDGDYNYYDYPNGG---GGG------SGGG 573
              ::|....:.|:.    ||..|.....|.|.|  ..|.||.|||...|   |||      .|||
  Fly   247 --QWDGQGSYGGYG----GGYGGYGAGGYGDYY--AGGYYNGYDYGYDGYGYGGGFEGNGYGGGG 303

  Fly   574 GGSVSGGTVLPLSAGGSQNSPMASG--QRSARG 604
            ||::.||...|...||.:.....:|  ||...|
  Fly   304 GGNMGGGRGGPRGGGGPKGGGGFNGGKQRGGGG 336

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Syp	NP_001262777.1	RRM1_hnRNPR_like	205..283	CDD:240695	21/75 (28%)
		RRM2_hnRNPR_like	286..367	CDD:240696	15/80 (19%)
		RRM3_hnRNPR_like	381..452	CDD:240697	18/78 (23%)
sqd	NP_731825.1	RRM_SF	58..129	CDD:302621	30/118 (25%)
		RRM2_hnRNPD_like	137..211	CDD:240775	17/105 (16%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C45464013
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	2	1.840