DRSC/TRiP Functional Genomics Resources

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Protein Alignment Syp and Rbp6

DIOPT Version :9

Sequence 1:NP_001262777.1 Gene:Syp / 42460 FlyBaseID:FBgn0038826 Length:761 Species:Drosophila melanogaster
Sequence 2:NP_001097631.1 Gene:Rbp6 / 39919 FlyBaseID:FBgn0260943 Length:499 Species:Drosophila melanogaster


Alignment Length:560 Identity:109/560 - (19%)
Similarity:181/560 - (32%) Gaps:198/560 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   201 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAAVNAVR 265
            ||.:..::|.|.:......:.|...|...|.|.:..:|.||.|..:||:.||||::.. :|:.|.
  Fly    24 VPNDPGKMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPN-SVDKVL 87

  Fly   266 QLNDFEIRTGKKIGVTISF----------NNHRLFVGNIPKNRDRDELIEEFSKHAPGLYEVIIY 320
            .....|: .|||:...::|          ...::|||.:......:::...|.:..|....::::
  Fly    88 TQGTHEL-DGKKVDPKVAFPRRAHPKMVTRTKKIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMF 151

  Fly   321 SSPDDKKKN--RGFCFLEYESHKAASLAKRRLGTGRIKVWGCDI--------IVDW--ADPQEEP 373
                ||:.|  |||.|:.::|.....           ||  |:|        :|:.  |.|:|  
  Fly   152 ----DKQTNRHRGFGFVTFQSEDVVD-----------KV--CEIHFHEINNKMVECKKAQPKE-- 197

  Fly   374 DEQTMSKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERVKKIKDYAFIHFEDRDSAVEAMRGLNGK 438
                     |:...||.:..:..:     ..||      ::..:...|.....:...|..||   
  Fly   198 ---------VMLPANLAKTRAAGR-----SAYG------ELVVWGSSHAHSTAATSAAAAGL--- 239

  Fly   439 EIGASNIEVSLAKPPSDKKKKEEILRARERRMMQMMQARPGIVGFETLSPYRNLSPTHPSIMSLT 503
                  :..|||...|..:::::..:.::::..|..|            .::.|..|||.    :
  Fly   240 ------LPSSLAAAASVLQQQQQQQQQQQQQQQQQQQ------------HHQQLHHTHPQ----S 282

  Fly   504 PMRPGARMPLRTPIPREYDYFYDFFGFSDYRQGGSFGNNVSYYDDMYRWIDGDYNYYDYPNGGGG 568
            |....|..|                                 :...:..:.|...|..||     
  Fly   283 PAHSHAHHP---------------------------------HTHSHSQLLGSLRYTPYP----- 309

  Fly   569 GSGGGGGSVSGGTVLP--LSAGG--------------------------------SQNSPMASGQ 599
                          ||  |||..                                .|...:|...
  Fly   310 --------------LPAHLSAAAVVVAQQQHHHQQQQQQQQQQQQQQVVAAQQQHQQQQSLAQVV 360

  Fly   600 RSARGSASG--------PSASPSLMGVGRG-------HGITVPRGRVVGQRGSI------SRLGA 643
            .:|.|:|.|        |.|:|||:....|       :.:......|||.:..:      |.|.|
  Fly   361 AAAAGAAPGLLPLANPAPPATPSLLQFAAGQSNAALANSLYADAAAVVGYKRLLAAAAVSSGLRA 425

  Fly   644 QTVPQAAGAAAAAGQAAAAVA---QRGATGQGAPAATGGF 680
            .|....|..||||...|||.|   |:....|.|..|...:
  Fly   426 PTTALGALQAAAANVPAAAAAAQLQQAQLRQNAALAAAHY 465

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SypNP_001262777.1 RRM1_hnRNPR_like 205..283 CDD:240695 22/77 (29%)
RRM2_hnRNPR_like 286..367 CDD:240696 18/92 (20%)
RRM3_hnRNPR_like 381..452 CDD:240697 12/70 (17%)
Rbp6NP_001097631.1 RRM1_MSI 31..105 CDD:241020 22/75 (29%)
RRM2_MSI 119..192 CDD:240769 18/89 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45463985
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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