Protein Alignment Syp and Secp43

DIOPT Version :9

• Sequence 1: NP_001262777.1
• Gene: Syp / 42460
• FlyBaseID: FBgn0038826
• Length: 761
• Species: Drosophila melanogaster
• Sequence 2: NP_608837.2
• Gene: Secp43 / 33652
• FlyBaseID: FBgn0031607
• Length: 336
• Species: Drosophila melanogaster
• Alignment Length: 269
• Identity: 57/269 - (21%)
• Similarity: 91/269 - (33%)
• Gaps: 101/269 - (37%)

  Fly   206 CEVFCGKIPKDMYEDELIPLFENCGIIWD---LRLMMDPMTGTNRGYAFVTFTNREAAVNAVRQL 267
            |:::.|.:...|.|:.:|..|...|  .|   :|||.:..||...||.||.|.:.:.|::|:.:|
  Fly     6 CQLWMGSLESYMTENFIIAAFRKMG--EDPTTVRLMRNKYTGEPAGYCFVNFISDDHALDAMHKL 68

  Fly   268 NDFEIRTGKKIGVTISFNNHRLFVGNIPKNRDRDELIEEFSKHAPGLYEVIIYSSPDDKKKNRGF 332
            |      ||.|..|......||   |...|.                     |..|.::::
  Fly    69 N------GKPIPGTNPIVRFRL---NSASNS---------------------YKLPGNERE---- 99

  Fly   333 CFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQTMSKVKVLYVRNLTQDVSEDK 397
                                  ..||                           |.:|:.||.:.:
  Fly   100 ----------------------FSVW---------------------------VGDLSSDVDDYQ 115

  Fly   398 LKEQF-EQYGKVERVKKI-------KDYAFIHFEDRDSAVEAMRGLNGK-EIGASNIEVSLAKPP 453
            |.:.| .::..::..|.|       |.|.|:.|...|....|:..:||. .:|...|::..|.|
  Fly   116 LYKVFSSKFTSIKTAKVILDSLGFSKGYGFVRFGIEDEQKSALYDMNGYIGLGTKPIKICNAVP- 179

  Fly   454 SDKKKKEEI 462
               |.|.|:
  Fly   180 ---KPKSEL 185

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Syp	NP_001262777.1	RRM1_hnRNPR_like	205..283	CDD:240695	26/79 (33%)
		RRM2_hnRNPR_like	286..367	CDD:240696	8/80 (10%)
		RRM3_hnRNPR_like	381..452	CDD:240697	19/79 (24%)
Secp43	NP_608837.2	RRM1_SECp43	7..90	CDD:241054	28/93 (30%)
		RRM2_SECp43	99..180	CDD:241056	22/137 (16%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C45463927
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	2	1.840