DRSC/TRiP Functional Genomics Resources

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Protein Alignment Syp and Hnrnpr

DIOPT Version :9

Sequence 1:NP_001262777.1 Gene:Syp / 42460 FlyBaseID:FBgn0038826 Length:761 Species:Drosophila melanogaster
Sequence 2:XP_038966069.1 Gene:Hnrnpr / 319110 RGDID:631348 Length:635 Species:Rattus norvegicus


Alignment Length:748 Identity:330/748 - (44%)
Similarity:419/748 - (56%) Gaps:150/748 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 SKMAEGNGELLDDINQKADDRGDGERTEDYPKLLEYGLDKKVAGKLDEIYKTGKLAHAELDERAL 105
            :....||...|.: .::..|......||.|..|:|.||.:|||.:||||::||.:|:.:|||||:
  Rat     2 ANQVNGNAVQLKE-EEEPMDTSSVTHTEHYKTLVEAGLPQKVAERLDEIFQTGLVAYVDLDERAI 65

  Fly   106 DALKEFPVDGALNVLGQFLESNLEHVSNKSAYLCGVMKTYRQKSRASQQGVAAPATVKGPDEDKI 170
            |||:||..:|||:||.||.||:|.||.||||:||||||||||:.:   ||.....:.|||||.||
  Rat    66 DALREFNEEGALSVLQQFKESDLSHVQNKSAFLCGVMKTYRQREK---QGSKVQESTKGPDEAKI 127

  Fly   171 KKILERTGYTLDVTTGQRKYGGPPPH--WEGNVPGNGCEVFCGKIPKDMYEDELIPLFENCGIIW 233
            |.:||||||||||||||||||||||.  :.|..||.|.|||.||||:|:|||||:||||..|.||
  Rat   128 KALLERTGYTLDVTTGQRKYGGPPPDSVYSGVQPGIGTEVFVGKIPRDLYEDELVPLFEKAGPIW 192

  Fly   234 DLRLMMDPMTGTNRGYAFVTFTNREAAVNAVRQLNDFEIRTGKKIGVTISFNNHRLFVGNIPKNR 298
            ||||||||::|.||||||:||..:|||..||:..:.:|||.||.:||.||..|:|||||:||||:
  Rat   193 DLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNK 257

  Fly   299 DRDELIEEFSK---HAPGLYEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGC 360
            .::.::|||||   ...||.:||:|..||||||||||||||||.||:|:.|:|||.:|::||||.
  Rat   258 TKENILEEFSKVTGLTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGN 322

  Fly   361 DIIVDWADPQEEPDEQTMSKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERVKKIKDYAFIHFEDR 425
            .:.|:||||.||||.:.|:|||||:||||...|:|:.|::.|.::||:|||||:|||||:|||||
  Rat   323 VVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDR 387

  Fly   426 DSAVEAMRGLNGKEIGASNIEVSLAKPPSDKKKKEEILRARERRMMQMMQARPGIVGFETLSPYR 490
            .:||:||..:|||||....||:.|||||..|:|:.:..|...|.           ..:|..  |.
  Rat   388 GAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQAARQASRS-----------TAYEDY--YY 439

  Fly   491 NLSPTHPSIMSLTPMR---PGARMPLRTPIPREYDYFYDFFGFSDYRQGGSFGNNVSYYDDMYRW 552
            :..|..|     .|||   .|.|        ..|.|..|::|:.|            ||||.|  
  Rat   440 HPPPRMP-----PPMRGRGRGGR--------GGYGYPPDYYGYED------------YYDDYY-- 477

  Fly   553 IDGDYNYYDYPNG----------GGGGSGGGGGSVSGGTVLPLSAGGSQNSPMASGQRSARGSAS 607
               .|:|:||..|          |....|.|||                        |..||:..
  Rat   478 ---GYDYHDYRGGYEDPYYGYDDGYAVRGRGGG------------------------RGGRGAPP 515

  Fly   608 GPSASPSLMGVGRGHGITVPRGRV-VGQRGSISRLGAQTVPQAAGAAAAAGQAAAAVAQRGATGQ 671
            .|          ||.|...||||. ..|||:         |......:..|:...|..|||...:
  Rat   516 PP----------RGRGAPPPRGRAGYSQRGA---------PLGPPRGSRGGRGGPAQQQRGRGSR 561

  Fly   672 GAPAATGGFRGVLPTRPSARGTQHVKPLQNLPVVGKRKFDGGHQNPADVKRRYPSGLIGNGGSWG 736
            ||....||..|                       ||||.||  .|..|.|||..:    |..:||
  Rat   562 GARGNRGGNVG-----------------------GKRKADG--YNQPDSKRRQTN----NQQNWG 597

  Fly   737 SLPLPQQPLGTNG------------EQWYMDTF 757
            |.|:.||||...|            :::|.||:
  Rat   598 SQPIAQQPLQQGGDYSGNYGYNNDNQEFYQDTY 630

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SypNP_001262777.1 RRM1_hnRNPR_like 205..283 CDD:240695 50/77 (65%)
RRM2_hnRNPR_like 286..367 CDD:240696 49/83 (59%)
RRM3_hnRNPR_like 381..452 CDD:240697 42/70 (60%)
HnrnprXP_038966069.1 NURR_hnRNPR 27..110 CDD:410955 53/82 (65%)
hnRNP-R-Q 106..630 CDD:273732 274/641 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 102 1.000 Domainoid score I6680
eggNOG 1 0.900 - - E1_KOG0117
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 549 1.000 Inparanoid score I1102
OMA 1 1.010 - - QHG49453
OrthoDB 1 1.010 - - D1384330at2759
OrthoFinder 1 1.000 - - FOG0000581
OrthoInspector 1 1.000 - - otm45375
orthoMCL 1 0.900 - - OOG6_104511
Panther 1 1.100 - - LDO PTHR21245
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X331
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1312.880

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