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Protein Alignment Syp and Rbm47

DIOPT Version :9

Sequence 1:	NP_001262777.1	Gene:	Syp / 42460	FlyBaseID:	FBgn0038826	Length:	761	Species:	Drosophila melanogaster
Sequence 2:	NP_001120854.1	Gene:	Rbm47 / 245945	MGIID:	2384294	Length:	590	Species:	Mus musculus

Alignment Length:	581	Identity:	222/581 - (38%)
Similarity:	300/581 - (51%)	Gaps:	97/581 - (16%)

- Green bases have known domain annotations that are detailed below.

  Fly   154 QGVAAPATVKGPDEDKIKKILERTGYTLDVTTGQRKYGGPPPHWEGNVPGNGCEVFCGKIPKDMY 218
            :|||.     .|:|..:..::||||||:....||||||||||.|||..|..|||||.||||:|:|
Mouse    24 EGVAG-----APNEAALLALIERTGYTMVQENGQRKYGGPPPGWEGPHPQRGCEVFVGKIPRDVY 83

  Fly   219 EDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAAVNAVRQLNDFEIRTGKKIGVTIS 283
            ||||:|:||..|.|::|||||| ..|.|||||||.:.::..|..|||:||::|||.|:.:||..|
Mouse    84 EDELVPVFETVGRIYELRLMMD-FDGKNRGYAFVMYCHKHEAKRAVRELNNYEIRPGRLLGVCCS 147

  Fly   284 FNNHRLFVGNIPKNRDRDELIEEFSKHAPGLYEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKR 348
            .:|.|||:|.|||.:.|.|::||.:|...|:..||:|:|..||.|||||.|:|||||:||::|:|
Mouse   148 VDNCRLFIGGIPKMKKRGEILEEIAKVTEGVLNVIVYASAADKMKNRGFAFVEYESHRAAAMARR 212

  Fly   349 RLGTGRIKVWGCDIIVDWADPQEEPDEQTMSKVKVLYVRNLTQDVSEDKLKEQFEQY--GKVERV 411
            :|..|||::||..|.||||:|:.:.||..|..||:||||||..:.:|:.:|:.|.|:  |.||||
Mouse   213 KLMPGRIQLWGHQIAVDWAEPEIDVDEDVMQTVKILYVRNLMIETTEETIKKSFGQFNPGCVERV 277

  Fly   412 KKIKDYAFIHFEDRDSAVEAMRGLNGKEIGASNIEVSLAKPPSDKKKKEEILRARE--RRMMQMM 474
            |||:||||:||..|:.||.||..|||.|:..|.:||:||| |.||::.....:|.:  ....:.:
Mouse   278 KKIRDYAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAK-PVDKEQYSRYQKAAKGGGGSAEAV 341

  Fly   475 QARPGIV-----------GFETLSPYRNL-SPTHPSIMSLTPMRPGARMPL--RTPIPREYDYFY 525
            ..:|..|           |:    ||..| .|.....:....:|...|...  |||.||
Mouse   342 AQQPSYVYSCDPYTLAYYGY----PYNALIGPNRDYFVKTGSIRGRGRGAAGNRTPGPR------ 396

  Fly   526 DFFGFSDYRQGGSFGNNVSYYDDMYRWIDGDYNYYDYPNGGGGGSGGGGGSVSGGTVLPLS---- 586
                 ..|..|.|.|..:               |..|..|.|.....|...|....:.|::
Mouse   397 -----GSYLGGYSAGRGI---------------YSRYHEGKGKQQEKGYELVPNLEISPVNPVAI 441

  Fly   587 AGGSQNSPMASGQRSARGSASGPSASPSLMGVGRGHGITVPRGRVVGQRGSISRLGAQTVPQAAG 651
            ..|:...|....|.|...:|..|.              .:..|::......||.:..|..|..|.
Mouse   442 KPGTVAIPAIGAQYSMFQAAPAPK--------------IIEDGKIHTMEHMISPIAVQPDPATAA 492

  Fly   652 AAAAAGQAAAAVAQRGATGQGAPAATGGFRGVLPTRPSARG-----TQHVKP-LQNLPVVG 706
            |||||..|||.:          ||.:        |.|..:|     ...|.| :|.:|..|
Mouse   493 AAAAAAAAAAVI----------PAVS--------TPPPFQGRPITPVYTVAPNVQRIPTAG 535

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.