Protein Alignment Syp and A1cf

DIOPT Version :9

• Sequence 1: NP_001262777.1
• Gene: Syp / 42460
• FlyBaseID: FBgn0038826
• Length: 761
• Species: Drosophila melanogaster
• Sequence 2: XP_006231334.2
• Gene: A1cf / 170912
• RGDID: 619834
• Length: 594
• Species: Rattus norvegicus
• Alignment Length: 593
• Identity: 217/593 - (36%)
• Similarity: 294/593 - (49%)
• Gaps: 110/593 - (18%)

  Fly   167 EDKIKKILERTGYTLDVTTGQRKYGGPPPHWEGNVPGNGCEVFCGKIPKDMYEDELIPLFENCGI 231
            |..::.:::||||:|....||||||||||.|:...|..|||:|.||:|:|::|||||||.|....
  Rat    17 EAALRALVQRTGYSLVQENGQRKYGGPPPGWDTTPPERGCEIFIGKLPRDLFEDELIPLCEKMVK 81

  Fly   232 IWDLRLMMDPMTGTNRGYAFVTFTNREAAVNAVRQLNDFEIRTGKKIGVTISFNNHRLFVGNIPK 296
            |:::|:||| ..|.|||||||||:|::.|.||::|||::|||.|:.:||..|.:|.|||||.|||
  Rat    82 IYEMRMMMD-FNGNNRGYAFVTFSNKQEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPK 145

  Fly   297 NRDRDELIEEFSKHAPGLYEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCD 361
            .:.|:|::.|..|...|:.:||:|.|..||.|||||.|:|||||:||::|:|||..|||::||..
  Rat   146 TKKREEILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHP 210

  Fly   362 IIVDWADPQEEPDEQTMSKVKVLYVRNLTQDVSEDKLKEQFEQY--GKVERVKKIKDYAFIHFED 424
            |.||||:|:.|.||.|||.||:||||||....||:.::::|...  |.|||||||:||||:||.:
  Rat   211 IAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNSIKPGAVERVKKIRDYAFVHFSN 275

  Fly   425 RDSAVEAMRGLNGKEIGASNIEVSLAKPPSDKKKKEEILRAR-ERRMMQMMQARP---------- 478
            |:.|||||:.||||.:..|.|||:||| |.||.......|.. .|..|......|
  Rat   276 REDAVEAMKALNGKVLDGSPIEVTLAK-PVDKDSYVRYTRGTGGRNTMLQEYTYPLSHVYDPTTT 339

  Fly   479 --GIVGFETLSPYRNLSPTHPSIMSLTPMRPGARMPLRTPIPREYDYFYDFFGFSDYRQGGSFGN 541
              |...|.|...|..:...|   ...|......|..:|||..||.
  Rat   340 YLGAPVFYTPQAYAAIPSLH---FPATKGHLSNRALIRTPSVREI-------------------- 381

  Fly   542 NVSYYDDMYRWIDGDYNYYDYPNG-----GGGGSG-------GGGGSVSGG-------TVLPLSA 587
                             |.:.|.|     |.||.|       |.|..|.|.       .:||
  Rat   382 -----------------YMNVPVGAAGVRGLGGRGYLAYTGLGRGYQVKGDKRQDKLYDLLP--- 426

  Fly   588 GGSQNSPMASGQRSARGSASGPSASPSL--------------MGVGRG------HGITVPRGRVV 632
             |.:.:||.:.....:|....|.....:              ..:|:.      :.:|:|  .:.
  Rat   427 -GMELTPMNTISLKPQGVKLAPQILEEICQKNNWGQPVYQLHSAIGQDQRQLFLYKVTIP--ALA 488

  Fly   633 GQRGSI-----SRLGAQTVPQAAGAAAAAGQAAAAVAQRGATGQGAPAATGG--FRG-VLPTRPS 689
            .|..:|     .:|.|........||....|......:.|..|..||.||..  |.| .:|:..:
  Rat   489 SQNPAIHPFTPPKLSAYVDEAKRYAAEHTLQTLGIPTEGGDAGTTAPTATSATVFPGYAVPSATA 553

  Fly   690 ARGTQHVK 697
            ...|..:|
  Rat   554 PVSTAQLK 561

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Syp	NP_001262777.1	RRM1_hnRNPR_like	205..283	CDD:240695	44/77 (57%)
		RRM2_hnRNPR_like	286..367	CDD:240696	45/80 (56%)
		RRM3_hnRNPR_like	381..452	CDD:240697	41/72 (57%)
A1cf	XP_006231334.2	hnRNP-R-Q	2..594	CDD:273732	217/593 (37%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG0117
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1384330at2759
OrthoFinder	1	1.000	-	-		FOG0000581
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	1	1.000	-	-		X331
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	6	5.820