Protein Alignment Syp and a1cf

DIOPT Version :9

• Sequence 1: NP_001262777.1
• Gene: Syp / 42460
• FlyBaseID: FBgn0038826
• Length: 761
• Species: Drosophila melanogaster
• Sequence 2: XP_002935470.2
• Gene: a1cf / 100493284
• XenbaseID: XB-GENE-952965
• Length: 591
• Species: Xenopus tropicalis
• Alignment Length: 624
• Identity: 223/624 - (35%)
• Similarity: 310/624 - (49%)
• Gaps: 132/624 - (21%)

  Fly   147 QKSRASQQGVAAPATVKGPDEDKIKKILERTGYTLDVTTGQRKYGGPPPHWEGNVPGNGCEVFCG 211
            :.::.|.:|:|  .|.|   |..::.:::||||:|....|||:||||||.|:|..|..|||:|.|
 Frog     2 ESNQKSGEGMA--GTQK---EAALRALIQRTGYSLTQENGQRRYGGPPPGWDGPPPERGCEIFIG 61

  Fly   212 KIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAAVNAVRQLNDFEIRTGK 276
            |:|:|::|||||||.|..|.::::|:||| ..|.||||||||||||:.|.:|::|||::|||.|:
 Frog    62 KLPRDLFEDELIPLCEKTGKVYEMRMMMD-FNGNNRGYAFVTFTNRQDARDAIKQLNNYEIRNGR 125

  Fly   277 KIGVTISFNNHRLFVGNIPKNRDRDELIEEFSKHAPGLYEVIIYSSPDDKKKNRGFCFLEYESHK 341
            .:||..|.:|.|||||.|||.:.|:|::.|..|...|:.:||:|.|..||.|||||.|:|||||:
 Frog   126 LLGVCASVDNCRLFVGGIPKTKRREEILVEMRKVTDGVLDVIVYPSAADKSKNRGFAFVEYESHR 190

  Fly   342 AASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQTMSKVKVLYVRNLTQDVSEDKLKEQFEQY- 405
            ||::|:|:|..|||::||..|.||||:|:.|.||.|||.||:||||||....:|:.::::|...
 Frog   191 AAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSVKILYVRNLMLTTAEETIEKEFSNVK 255

  Fly   406 -GKVERVKKIKDYAFIHFEDRDSAVEAMRGLNGKEIGASNIEVSLAKPPSDKKKKEEILRARERR 469
             |.|||||||:||||:||::|..||:||..||||.|..|.|||:||| |.||:......|....|
 Frog   256 PGSVERVKKIRDYAFVHFKNRTDAVDAMNALNGKIIDGSPIEVTLAK-PVDKESYVRYTRGTGGR 319

  Fly   470 MMQMMQARPGIVG--FETLSPYRNLSPTHPSIMSLTPMRPGARMP-----------LRTPIPREY 521
            ...:.......:|  ::..:.|.. :|...:..:.|...|..:.|           :|.|..||.
 Frog   320 GAAIQGEYAYTIGHVYDPTTAYLG-APVFYAPPAYTAAIPSIQFPPAKGYVSNRSLVRPPSVREI 383

  Fly   522 DYFYDFFGFSDYRQGGSFGNNVSYYDDMYRWIDGDYNYYDYPNGGGGGSGGGGGSVSGG------ 580
             |.....|.:..|..|..|                  |..|.   |.|.|..|..:.|.
 Frog   384 -YMSVPVGAAGVRGLGGRG------------------YLAYT---GLGRGYAGFQMKGDKRADDK 426

  Fly   581 --TVLPLSAGGSQNSPMASGQRSARG-------------------------SASGP--------- 609
              .:||    |.:.:||.:.....:|                         ||.||
 Frog   427 LYDILP----GMELTPMTTVALKPQGIKLGPQILEEICQKNNWGQPVYQLHSAIGPDQRQLFLYK 487

  Fly   610 -------SASPSLMGVGRGHGITVPR-------GRVVGQRGSISRLGAQT--------------- 645
                   |.:|::      |..|.|:       .:......::..||..|
 Frog   488 VTIPALASQNPTI------HPFTPPKLCISVDEAKTYAADYTLQTLGIPTETAEHPTAFAGYTIA 546

  Fly   646 -VPQAAGA-----AAAAGQAAAAVAQRGATGQGAPAATG 678
             .|.|..|     |.|.||..||.|...|....|.||.|
 Frog   547 NTPAAVAATQLKQAVALGQDIAAYATYEAYPAFAVAARG 585

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Syp	NP_001262777.1	RRM1_hnRNPR_like	205..283	CDD:240695	45/77 (58%)
		RRM2_hnRNPR_like	286..367	CDD:240696	44/80 (55%)
		RRM3_hnRNPR_like	381..452	CDD:240697	40/72 (56%)
a1cf	XP_002935470.2	hnRNP-R-Q	2..591	CDD:273732	223/624 (36%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1384330at2759
OrthoFinder	1	1.000	-	-		FOG0000581
OrthoInspector	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	1	1.000	-	-		X331
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	4	3.920