DRSC/TRiP Functional Genomics Resources

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Protein Alignment Prosalpha4T1 and PAB1

DIOPT Version :9

Sequence 1:NP_650910.1 Gene:Prosalpha4T1 / 42457 FlyBaseID:FBgn0265606 Length:249 Species:Drosophila melanogaster
Sequence 2:NP_001031057.1 Gene:PAB1 / 838217 AraportID:AT1G16470 Length:235 Species:Arabidopsis thaliana


Alignment Length:236 Identity:72/236 - (30%)
Similarity:133/236 - (56%) Gaps:7/236 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 SRYGRALTIFSPDGHLLQVEYAQEAVRKGSTAVGVRGANCVVLGVEKSSVSEMQEDRTVRKISML 67
            |:|..:||.|||.|.|:|:|:|..||..|.|::|::.:|.||:..||...|.:.::.:|:||..|
plant     4 SQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDEASVQKIQHL 68

  Fly    68 DRHVALAFAGLTADARILINRGQVECQSHRLNFENQVTLEYITRYLAQLKQKYTQCNGRRPFGIS 132
            ..::.:.::|:..|.|:|:.:.:.:.:.:...::..:.:..:.|..|.:.|::||..|.||||:|
plant    69 TPNIGVVYSGMGPDFRVLVRKSRKQAEQYLRLYKEPIPVTQLVRETATVMQEFTQSGGVRPFGVS 133

  Fly   133 CLIGGIDADGSARLFHTEPSGIFHEYKATATGRWANTVREFFEKAYS-DHEVTTKCDAIKLAMRA 196
            .|:.|.| |...:|:..:|||.:..:||:|.|:..:..:.|.||.|: |.|:.   |||..|:..
plant   134 LLVAGYD-DKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDMELD---DAIHTAILT 194

  Fly   197 LLE--VTQMSQMRLEVAVLENGKPMKMLDSVVISEIVKIVQ 235
            |.|  ..::|...:|:..:...|..::|....|.:.:..|:
plant   195 LKEGFEGEISSKNIEIGKIGADKVFRVLTPAEIDDYLAEVE 235

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Prosalpha4T1NP_650910.1 PRK03996 5..239 CDD:235192 71/234 (30%)
proteasome_alpha_type_7 5..213 CDD:239724 67/210 (32%)
PAB1NP_001031057.1 proteasome_alpha_type_2 6..232 CDD:239719 70/229 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1222564at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
22.010

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