DRSC/TRiP Functional Genomics Resources

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Protein Alignment Prosalpha4T1 and Psma6

DIOPT Version :9

Sequence 1:NP_650910.1 Gene:Prosalpha4T1 / 42457 FlyBaseID:FBgn0265606 Length:249 Species:Drosophila melanogaster
Sequence 2:NP_036098.1 Gene:Psma6 / 26443 MGIID:1347006 Length:246 Species:Mus musculus


Alignment Length:246 Identity:64/246 - (26%)
Similarity:129/246 - (52%) Gaps:15/246 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 SSRYGRALTIFSPDGHLLQVEYAQEAVRKGS-TAVGVRGANCVVLGVEKSSVSEMQEDRTVRKIS 65
            |:.:.|.:|||||:|.|.|||||.:|:.:|. |:|.|||.:|.|:..:|....::.:..||..:.
Mouse     6 SAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLF 70

  Fly    66 MLDRHVALAFAGLTADARILINRGQVECQSHRLNFENQVTLEYITRYLAQLKQKYTQCNGRRPFG 130
            .:...:.....|:|||:|..:.|.:.|..:.:..:..::.::.:.:.:|.:.|.|||....||.|
Mouse    71 KITESIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLG 135

  Fly   131 ISCLIGGIDADGSARLFHTEPSGIFHEYKATATGRWANTVREFFEKAYSDHEVTTKCD-----AI 190
            ...::.|||.:...:::..:|:|.:..:||||.|     |::....::.:.:|..|.|     .:
Mouse   136 CCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAG-----VKQTESTSFLEKKVKKKFDWTFEQTV 195

  Fly   191 KLAMRALLEVTQM----SQMRLEVAVLENGKPMKMLDSVVISEIVKIVQNE 237
            :.|:..|..|..:    |::.:.|..:||.|...:.::.:.:.:|.:.:.:
Mouse   196 ETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDAHLVALAERD 246

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Prosalpha4T1NP_650910.1 PRK03996 5..239 CDD:235192 63/243 (26%)
proteasome_alpha_type_7 5..213 CDD:239724 59/217 (27%)
Psma6NP_036098.1 proteasome_alpha_type_6 8..220 CDD:239723 58/216 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0638
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1222564at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

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