DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Prosalpha4T1 and pas-2

DIOPT Version :9

Sequence 1:NP_650910.1 Gene:Prosalpha4T1 / 42457 FlyBaseID:FBgn0265606 Length:249 Species:Drosophila melanogaster
Sequence 2:NP_505750.1 Gene:pas-2 / 179493 WormBaseID:WBGene00003923 Length:231 Species:Caenorhabditis elegans


Alignment Length:216 Identity:77/216 - (35%)
Similarity:117/216 - (54%) Gaps:10/216 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSSRYGRALTIFSPDGHLLQVEYAQEAVRKGSTAVGVRGANCVVLGVEKSSVSEMQEDRTVRKIS 65
            |...||.:||.|||.|.|:|:|||..||:.|..:||:|..:.|||..|... |.:.:|:.  |:.
 Worm     1 MGDHYGFSLTTFSPSGKLMQIEYALNAVKNGQPSVGLRAKDGVVLATENVG-SVLTDDQP--KVE 62

  Fly    66 MLDRHVALAFAGLTADARILINRGQVECQSHRLNF-ENQVTLEYITRYLAQLKQKYTQCNGRRPF 129
            .:.:|:...::|:..|.|||:.:.:.....:.:.: |...|::.:|. :|.:.|:|||..|.|||
 Worm    63 QISKHIGCVYSGMGPDFRILVKKARKIAMEYEMMYGEEMPTIQLVTD-IAAVMQEYTQSGGVRPF 126

  Fly   130 GISCLIGGIDAD-GSARLFHTEPSGIFHEYKATATGRWANTVREFFEKAYSDHEVTTKCDAIKLA 193
            |.|.||.|.|.: |...||..:|||.:..:||||.|:.....:.|.||.:|  |.....|.|..|
 Worm   127 GASLLIAGWDKNPGRPLLFQCDPSGAYFAWKATALGKNDVNAKTFLEKRFS--EALELDDGIHTA 189

  Fly   194 MRALLEV--TQMSQMRLEVAV 212
            :..|.|.  ..|::..:||||
 Worm   190 LLTLRESFDVGMNENNVEVAV 210

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Prosalpha4T1NP_650910.1 PRK03996 5..239 CDD:235192 76/212 (36%)
proteasome_alpha_type_7 5..213 CDD:239724 76/212 (36%)
pas-2NP_505750.1 proteasome_alpha_type_2 5..229 CDD:239719 76/212 (36%)
PRK03996 10..228 CDD:235192 73/207 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1222564at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

Return to query results.
Submit another query.