DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cdk2 and cdk2

DIOPT Version :9

Sequence 1:NP_001163666.1 Gene:Cdk2 / 42453 FlyBaseID:FBgn0004107 Length:314 Species:Drosophila melanogaster
Sequence 2:NP_998571.1 Gene:cdk2 / 406715 ZFINID:ZDB-GENE-040426-2741 Length:298 Species:Danio rerio


Alignment Length:302 Identity:190/302 - (62%)
Similarity:239/302 - (79%) Gaps:11/302 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 LDNFQRAEKIGEGTYGIVYKARSNSTGQDVALKKIRLEGETEGVPSTAIREISLLKNLKHPNVVQ 69
            :::||:.|||||||||:||||::..||:.||||||||:.|||||||||||||||||.|.|||:|:
Zfish     1 MESFQKVEKIGEGTYGVVYKAKNKVTGETVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVK 65

  Fly    70 LFDVVISGNNLYMIFEYLNMDLKKLMDKK--KDVFTPQLIKSYMHQILDAVGFCHTNRILHRDLK 132
            |.||:.:.|.||::||:|:.|||:.||..  ..:..| |:|||:.|:|..:.|||::|:||||||
Zfish    66 LRDVIHTENKLYLVFEFLHQDLKRFMDSTSVSGISLP-LVKSYLFQLLQGLAFCHSHRVLHRDLK 129

  Fly   133 PQNLLVDTAGKIKLADFGLARAFNVPMRAYTHEVVTLWYRAPEILLGTKFYSTGVDIWSLGCIFS 197
            |||||::..|:||||||||||||.||:|.||||||||||||||||||.|:|||.||||||||||:
Zfish   130 PQNLLINAQGEIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFA 194

  Fly   198 EMIMRRSLFPGDSEIDQLYRIFRTLSTPDETNWPGVTQLPDFKTKFPRWEGTNMPQ--PITEHEA 260
            |||.||:|||||||||||:||||||.||||:.|||||.:||:|..||:|...::.:  |..:.:.
Zfish   195 EMITRRALFPGDSEIDQLFRIFRTLGTPDESIWPGVTSMPDYKPSFPKWARQDLSKVVPPLDEDG 259

  Fly   261 HELIMSMLCYDPNLRISAKDALQHAYFRNVQHVDHVALPVDP 302
            .:|:..||.||||.|||||:||.|.:||:      |.:||.|
Zfish   260 RDLLGQMLTYDPNKRISAKNALVHRFFRD------VTMPVPP 295

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cdk2NP_001163666.1 PLN00009 5..293 CDD:177649 186/291 (64%)
STKc_CDK1_CdkB_like 8..287 CDD:270829 184/282 (65%)
cdk2NP_998571.1 PLN00009 1..291 CDD:177649 187/296 (63%)
STKc_CDK2_3 3..286 CDD:270844 184/283 (65%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 385 1.000 Domainoid score I773
eggNOG 1 0.900 - - E1_KOG0594
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H74409
Inparanoid 1 1.050 392 1.000 Inparanoid score I1936
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1010560at2759
OrthoFinder 1 1.000 - - FOG0000411
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100334
Panther 1 1.100 - - LDO PTHR24056
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R185
SonicParanoid 1 1.000 - - X960
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1211.860

Return to query results.
Submit another query.