DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cdk2 and Cdk2

DIOPT Version :9

Sequence 1:NP_001163666.1 Gene:Cdk2 / 42453 FlyBaseID:FBgn0004107 Length:314 Species:Drosophila melanogaster
Sequence 2:XP_006240840.1 Gene:Cdk2 / 362817 RGDID:70486 Length:346 Species:Rattus norvegicus


Alignment Length:346 Identity:191/346 - (55%)
Similarity:234/346 - (67%) Gaps:52/346 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 LDNFQRAEKIGEGTYGIVYKARSNSTGQDVALKKIRLEGETEGVPSTAIREISLLKNLKHPNVVQ 69
            ::|||:.|||||||||:||||::..||:.||||||||:.|||||||||||||||||.|.|||:|:
  Rat     1 MENFQKVEKIGEGTYGVVYKAKNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVK 65

  Fly    70 LFDVVISGNNLYMIFEYLNMDLKKLMDKKKDVFTP-QLIKSYMHQILDAVGFCHTNRILHRDLKP 133
            |.||:.:.|.||::||:|:.||||.||.......| .|||||:.|:|..:.|||::|:|||||||
  Rat    66 LLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKP 130

  Fly   134 QNLLVDTAGKIKLADFGLARAFNVPMRAYTHEVVTLWYRAPEILLGTKFYSTGVDIWSLGCIFSE 198
            ||||::..|.||||||||||||.||:|.||||||||||||||||||.|:|||.||||||||||:|
  Rat   131 QNLLINAEGSIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAE 195

  Fly   199 M------------------------------------------------IMRRSLFPGDSEIDQL 215
            |                                                :.||:|||||||||||
  Rat   196 MHLVCTQHHAKCCGEHRRNGRHSLCPLCSYLEVAASQGGGMTAVSTPYPVTRRALFPGDSEIDQL 260

  Fly   216 YRIFRTLSTPDETNWPGVTQLPDFKTKFPRWEGTNMPQ--PITEHEAHELIMSMLCYDPNLRISA 278
            :||||||.||||..|||||.:||:|..||:|...:..:  |..:.:...|:..||.||||.||||
  Rat   261 FRIFRTLGTPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISA 325

  Fly   279 KDALQHAYFRNV-QHVDHVAL 298
            |.||.|.:|::| :.|.|:.|
  Rat   326 KAALAHPFFQDVTKPVPHLRL 346

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cdk2NP_001163666.1 PLN00009 5..293 CDD:177649 188/339 (55%)
STKc_CDK1_CdkB_like 8..287 CDD:270829 185/329 (56%)
Cdk2XP_006240840.1 STKc_CDK2_3 3..334 CDD:270844 191/344 (56%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 385 1.000 Domainoid score I781
eggNOG 1 0.900 - - E1_KOG0594
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H74409
Inparanoid 1 1.050 391 1.000 Inparanoid score I1924
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1010560at2759
OrthoFinder 1 1.000 - - FOG0000411
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100334
Panther 1 1.100 - - LDO PTHR24056
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X960
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1110.870

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