DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cdk2 and Cdkl1

DIOPT Version :10

Sequence 1:NP_524420.1 Gene:Cdk2 / 42453 FlyBaseID:FBgn0004107 Length:314 Species:Drosophila melanogaster
Sequence 2:NP_001020292.1 Gene:Cdkl1 / 314198 RGDID:1305080 Length:352 Species:Rattus norvegicus


Alignment Length:324 Identity:117/324 - (36%)
Similarity:177/324 - (54%) Gaps:28/324 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 LDNFQRAEKIGEGTYGIVYKARSNSTGQDVALKKIRLEGETEGV-PSTAIREISLLKNLKHPNVV 68
            ::.:::..|||||:||:|:|.|:..|||.||:|:. ||.|.:.| ...|:|||.:||.|||||:|
  Rat     1 MEKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKRF-LETEDDPVIKKIALREIRMLKQLKHPNLV 64

  Fly    69 QLFDVVISGNNLYMIFEYLNMDLKKLMDKKKDVFTPQLIKSYMHQILDAVGFCHTNRILHRDLKP 133
            .|.:|......|:::|||.:..:...:|:.:......|:|:...|.|.||.|||.:..:|||:||
  Rat    65 SLLEVFRRKRRLHLVFEYCHHTVLHELDRYQRGVPEPLVKNITWQTLQAVNFCHKHNCIHRDVKP 129

  Fly   134 QNLLVDTAGKIKLADFGLARAFNVPMRAYTHEVVTLWYRAPEILLGTKFYSTGVDIWSLGCIFSE 198
            :|:|:.....|||.|||.||....|...||..|.|.|||:||:|:|...|...||:|::||:|:|
  Rat   130 ENILITKHSVIKLCDFGFARLLTGPGDYYTDYVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAE 194

  Fly   199 MIMRRSLFPGDSEIDQLYRIFRTLSTPDETNWPGVTQLPDFKTKFPR---WEGTNMPQPITEHEA 260
            ::....|:||.|::||||.|.:||.          ..:|..:..|..   :.|..:|.| .:.|.
  Rat   195 LLSGVPLWPGKSDVDQLYLIRKTLG----------DLIPRHQQVFSMNQYFSGVKIPDP-EDMET 248

  Fly   261 HELIMSMLCY------------DPNLRISAKDALQHAYFRNVQHVDHVALPVDPNAGSASRLTR 312
            .||....:.|            ||..|::.:..|||.||.:::.|..:|.|.|.......|.:|
  Rat   249 LELKFPNISYSALGFLKGCLHMDPAERLTCEQLLQHPYFDSIRDVGELARPHDKPTRKTLRQSR 312

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cdk2NP_524420.1 STKc_CDK1_CdkB_like 8..287 CDD:270829 109/294 (37%)
Cdkl1NP_001020292.1 STKc_CDKL1_4 2..287 CDD:270837 109/296 (37%)
[NKR]KIAxRE 45..51 1/5 (20%)

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