DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4000 and col-58

DIOPT Version :10

Sequence 1:NP_650906.1 Gene:CG4000 / 42451 FlyBaseID:FBgn0038820 Length:263 Species:Drosophila melanogaster
Sequence 2:NP_491822.2 Gene:col-58 / 184957 WormBaseID:WBGene00000634 Length:289 Species:Caenorhabditis elegans


Alignment Length:227 Identity:62/227 - (27%)
Similarity:80/227 - (35%) Gaps:73/227 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 YLLSPPVVLLV---------------QPPPPPPEDDGSYKPPSPPEDGSWQPQPGLEGEYSDPEL 83
            ||...|||.:.               :.||.||..:|        ||| :..:||:.|.....::
 Worm    77 YLTRAPVVPVTGGFQTGRTANRGCNCRGPPGPPGFNG--------EDG-YDGEPGVPGSSGGDDI 132

  Fly    84 SQSGSGSITASDAGAAALSLVASQSVDAQDAPAPAEAGGAGGAGQAGQAGALLGGAGGAGGAGGG 148
                  |:...|.|..|            ..|| ...|..|..|..|..|  :.||.|..|..| 
 Worm   133 ------SVLRHDPGRCA------------QCPA-GPMGPPGPRGPPGVPG--ITGAPGLDGIPG- 175

  Fly   149 GSAGGGGGGGGGGGGGTATSGQSGDSGQPGAPSPAG-PQPDGEDGADGAD--------GPDGPDG 204
                              ..|..|..|:||.|.|.| |..||:.|..|.:        ||.||.|
 Worm   176 ------------------RHGTPGYPGEPGLPGPVGDPGFDGKPGNPGNNGVRVRRIPGPPGPRG 222

  Fly   205 SKGGKGGKGGKGARNGAGGGGGAGGAAPQPAP 236
            ::|..|.:||.|:...||..|.:|...||..|
 Worm   223 AEGDSGVQGGPGSPGLAGAPGDSGAPGPQGPP 254

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4000NP_650906.1 None
col-58NP_491822.2 Col_cuticle_N 10..61 CDD:198156
gly_rich_SclB <113..>243 CDD:468478 48/178 (27%)
Blue background indicates that the domain is not in the aligned region.

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