DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4000 and col-172

DIOPT Version :10

Sequence 1:NP_650906.1 Gene:CG4000 / 42451 FlyBaseID:FBgn0038820 Length:263 Species:Drosophila melanogaster
Sequence 2:NP_001024635.1 Gene:col-172 / 180934 WormBaseID:WBGene00000745 Length:341 Species:Caenorhabditis elegans


Alignment Length:183 Identity:60/183 - (32%)
Similarity:71/183 - (38%) Gaps:47/183 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    35 LLSPPVVLLVQPPPP----PPEDDGSYKPPS-PPEDGSWQPQ--PGLEGEYSDPELSQSGSGSIT 92
            :|.||   |.|.|.|    ||...|   ||. |.:.|...|:  |||:|        |.|.    
 Worm   182 ILLPP---LGQAPEPCIICPPGQTG---PPGFPGQKGPNGPRGSPGLQG--------QDGK---- 228

  Fly    93 ASDAGAAALSLVASQSVDAQDAPA--PAEAGGAGGAGQAGQAGALLGGAGGAGGAGGGGSAGGGG 155
                       ...|.:.....|.  |...|..|..|:.|:...:.|.||.||..|..|:.|..|
 Worm   229 -----------KGEQGMPGPQGPTGRPGRPGPKGPKGEDGRVIMVAGPAGPAGPPGLPGTPGKRG 282

  Fly   156 GGGGGG-GGGTATSGQSGDSGQPGAPSPAGPQPDGEDGADGADGPDGPDGSKG 207
            ..|..| .|.....||.||||..|        |||::||.|..||.||.|.||
 Worm   283 ARGMDGLPGPQGAPGQQGDSGLSG--------PDGKEGARGERGPQGPQGLKG 327

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4000NP_650906.1 None
col-172NP_001024635.1 Col_cuticle_N 19..69 CDD:198156
gly_rich_SclB <149..>327 CDD:468478 58/181 (32%)
Blue background indicates that the domain is not in the aligned region.

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