DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4000 and col-126

DIOPT Version :10

Sequence 1:NP_650906.1 Gene:CG4000 / 42451 FlyBaseID:FBgn0038820 Length:263 Species:Drosophila melanogaster
Sequence 2:NP_502115.1 Gene:col-126 / 178034 WormBaseID:WBGene00000700 Length:294 Species:Caenorhabditis elegans


Alignment Length:234 Identity:76/234 - (32%)
Similarity:89/234 - (38%) Gaps:42/234 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 GLPAVGTYLLSPPVVLLVQPPPPPPEDDGSYKPPSPPEDGSWQPQPGLEGEYSDPELSQSGSGSI 91
            ||||   :....|    .:|..||       .||.||      .|||..|....|. .:.|..::
 Worm    87 GLPA---WCQCEP----TKPTCPP-------GPPGPP------GQPGAPGVPGAPG-PRGGDSTV 130

  Fly    92 TASDAGAAALSLVASQSVDAQDAPAPAEAGGAGGAGQAGQAGALLGGAGGAGGAGGGGSAGGGGG 156
            |.:......:|.      |....|| ..||.||.:|.||.||. .|..|..|..|..|..|..|.
 Worm   131 TYAPINCPQVSF------DCIKCPA-GPAGPAGSSGPAGPAGP-SGQPGTPGQRGNDGFPGAPGA 187

  Fly   157 GGGGG----GGGTATSGQSGDSGQ--------PGAPSPAGPQ-PDGEDGADGADGPDGPDGSKGG 208
            .|..|    .|.....||.|..||        ||||..|||. |.|:||..|.||..|..|..|.
 Worm   188 PGDNGQPGFPGQDGAPGQPGADGQRGAGTPGAPGAPGNAGPAGPSGQDGFPGQDGAPGSAGPAGQ 252

  Fly   209 KGGKGGKGARNGAGGGGGAGGAAPQPAPAAIPVQAAVLI 247
            .|..|..|:....|..||.|......|..|.|.::||.:
 Worm   253 DGFPGNNGSDGQPGAPGGPGLPGNDAAYCACPPRSAVFL 291

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4000NP_650906.1 None
col-126NP_502115.1 Col_cuticle_N 4..56 CDD:198156
gly_rich_SclB <148..>262 CDD:468478 46/115 (40%)
Blue background indicates that the domain is not in the aligned region.

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