DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4000 and col-118

DIOPT Version :10

Sequence 1:NP_650906.1 Gene:CG4000 / 42451 FlyBaseID:FBgn0038820 Length:263 Species:Drosophila melanogaster
Sequence 2:NP_001122798.1 Gene:col-118 / 177699 WormBaseID:WBGene00000692 Length:297 Species:Caenorhabditis elegans


Alignment Length:212 Identity:65/212 - (30%)
Similarity:76/212 - (35%) Gaps:34/212 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    53 DDGSYKPPSPPEDGSWQPQPGLEGEYSDPELSQSGSGSITASDAGAAALSLVASQSVDAQDAP-- 115
            |.....||.||........||..||.....:....|...|:.|          .||:.....|  
 Worm    91 DSAPQCPPGPPGPQGAPGAPGTPGENGPRGMDNPHSLGSTSCD----------QQSIGCVQCPRG 145

  Fly   116 APAEAGGAGGAGQAGQAGALLGGAGGA--------------GGAGGGGSAGGGGGGGGGGGGGTA 166
            .|...|..|..||.|..||  .||.||              |.||..|:.|..|..|..|..|..
 Worm   146 PPGPPGDVGSVGQRGPDGA--SGAPGAASQIHGKPGLPGPPGDAGAPGAPGQDGAPGHPGADGQR 208

  Fly   167 TSGQSGDSGQPGAPSPAGPQPDGEDGADGADGPDGPDGSKGGKGGKGGKGARN--GAGGGGGAGG 229
            ..||.|..|.||.|...|  .:||.|..|.||.:|.:|..|..|.:|..|...  |..||.|..|
 Worm   209 QRGQPGPPGPPGRPGKVG--INGEPGQKGIDGENGSEGIPGVPGPRGAPGQPGTIGVPGGPGIPG 271

  Fly   230 AAPQPAPAAIPVQAAVL 246
            ...|..|.  |.::.:|
 Worm   272 RDGQYCPC--PPRSFIL 286

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4000NP_650906.1 None
col-118NP_001122798.1 Col_cuticle_N 4..56 CDD:198156
gly_rich_SclB <105..>259 CDD:468478 51/167 (31%)
Blue background indicates that the domain is not in the aligned region.

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