DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4000 and col-107

DIOPT Version :9

Sequence 1:NP_650906.1 Gene:CG4000 / 42451 FlyBaseID:FBgn0038820 Length:263 Species:Drosophila melanogaster
Sequence 2:NP_872105.1 Gene:col-107 / 176961 WormBaseID:WBGene00000681 Length:294 Species:Caenorhabditis elegans


Alignment Length:215 Identity:78/215 - (36%)
Similarity:91/215 - (42%) Gaps:37/215 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    45 QP---PPPPPEDDGSYKPPSPPEDGSWQPQPGLEGEYSDPELSQSGSGSITASDAGAAALSLVAS 106
            ||   |..|....|:  |.:|.|||:    ||..|:...     :|.|.:.::|||.........
 Worm    85 QPNNCPAGPAGPPGA--PGAPGEDGT----PGQAGKNGG-----NGIGIVNSADAGGCIKCPAGE 138

  Fly   107 QSVDAQDAP--APAEAGGAGGAGQAGQAGALLGGAGGAGGAGGGGSAGGGGGGGGGGGGGTATSG 169
            ......|.|  ||...|..|..|.|||.||    .|.||..|..|:||..|..|..||.|  .:|
 Worm   139 PGPAGPDGPAGAPGADGQPGAPGNAGQDGA----PGAAGEQGDAGAAGQDGEAGAPGGPG--KNG 197

  Fly   170 QSGDSGQPGAPSPAGPQ----PDGEDGADGADGPDGPDGSKGGKGGKGGKGARNGAGGGGGAGGA 230
            |.|.    |||.||||:    |.|:|||.|.||..|..||:|..|..|..|.....|..|.||| 
 Worm   198 QRGS----GAPGPAGPEGPAGPAGQDGAPGQDGAPGNAGSEGPAGAPGKDGEAGAPGQDGEAGG- 257

  Fly   231 APQPAPAAIPVQAAVLIPAP 250
                  ..||.|.|...|.|
 Worm   258 ------EGIPGQDAAYCPCP 271

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4000NP_650906.1 None
col-107NP_872105.1 Col_cuticle_N 6..57 CDD:198156
PRK07764 <135..284 CDD:236090 60/154 (39%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG28608
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
22.010

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