DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nep4 and Mmel1

DIOPT Version :9

Sequence 1:NP_650904.3 Gene:Nep4 / 42449 FlyBaseID:FBgn0038818 Length:1040 Species:Drosophila melanogaster
Sequence 2:NP_001101467.2 Gene:Mmel1 / 313755 RGDID:1309299 Length:774 Species:Rattus norvegicus


Alignment Length:789 Identity:277/789 - (35%)
Similarity:423/789 - (53%) Gaps:133/789 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   270 MDNKVDPCVDFYKYACGNWERLHPIPKDKAGFDTFEMLRESLDLVLRNLLEKNTPVHSAAELRKS 334
            ||....||.:||:||||.|.|.|.||:..:.:..|::||:.|:::|:.:||              
  Rat   101 MDQSKKPCDNFYQYACGGWLRHHVIPETNSRYSVFDILRDELEVILKGVLE-------------- 151

  Fly   335 PVRNTLFKLNEQGEGEGEADQAAELTAERLRRHIVSKRQLLNRVLVRYKRYTNGTKRKRLIETPR 399
                                                                             
  Rat   152 ----------------------------------------------------------------- 151

  Fly   400 ERTKEEEAAPPVVLPKDKTKDKSDNEEQLHVPTDFLKPHQDAQLKAKNLYRSCVNSAVLAKRGLE 464
                                   |:..|          |:.|..|||.|||||:|.:|:.||..|
  Rat   152 -----------------------DSSVQ----------HRPAVEKAKTLYRSCMNQSVIEKRDSE 183

  Fly   465 PLHTLIRELGGWPVLESQWSES-NFNWQV---LAATLRRYNNDILIVQWVGADIKNSEENIVQFD 525
            ||..::..:|||||...:|:|: ...|::   ||....::|..:||..::..|.:||..:::..|
  Rat   184 PLLNVLDMIGGWPVAMDKWNETMGPKWELERQLAVLNSQFNRRVLIDLFIWNDDQNSSRHVIYID 248

  Fly   526 QTGLGLPTREYFLQPSNAKYLQAYQRYMAEVMHKMG-----ASKAD-AQRVASELVAFETQLAGI 584
            |..||:|:|||:.:..:.:..:||.::|..|...:.     ..:.| .|...::::..||.||..
  Rat   249 QPTLGMPSREYYFKEDSHRVREAYLQFMTSVATMLRRDLNLPGETDLVQEEMAQVLHLETHLANA 313

  Fly   585 TAPAEQRLNVTKLYKRMTLDQLQA--VVPEIKWRAYLQSLQDR---EVLGTEEVVIYAVEYMSKL 644
            |.|.|:|.:||.||.||.|::||.  .:....|..::|::...   |:|..||||:|.:.|:..|
  Rat   314 TVPQEKRHDVTALYHRMGLEELQERFGLKGFNWTLFIQNVLSSVQVELLPNEEVVVYGIPYLENL 378

  Fly   645 VTLLDETDPRTVSNYMMWRFVRHRINNVDDRFDDIKQSFYHALFGREESPQRWKVCIAQVNTNMG 709
            ..::|....:|:.||::||.|..||.::..||.:.:..:..||:|......||:.|::.||:||.
  Rat   379 EEIIDVFPAQTLQNYLVWRLVLDRIGSLSQRFKEARVDYRKALYGTTMEEVRWRECVSYVNSNME 443

  Fly   710 MAVGSMFVSRYFDNNSKRDTLRMTHDLQQAFRDILKTTDWLDDTTKQLAEEKVNAMSLKIGYPDF 774
            .||||:::.|.|..:||.....:...::..|.|.|...:|:|:.:|:.|:||...:..:|||||:
  Rat   444 SAVGSLYIKRAFSKDSKSIVSELIEKIRSVFVDNLDELNWMDEESKKKAQEKALNIREQIGYPDY 508

  Fly   775 IL--NPSELNSKYAGIEIYPEKYFENTLNVLLHTAKTEQAKLHERVNKTNWQTAPAIVNAYYSRN 837
            ||  |...|:.:|:.:....:.||||.|..|.:.|:....||.|:|::..|....|:|||:||.|
  Rat   509 ILEDNNRHLDEEYSSLTFSEDLYFENGLQNLKNNAQRSLKKLREKVDQNLWIIGAAVVNAFYSPN 573

  Fly   838 KNQIMFPAGILQPPFYHRHFPKSLNFGGIGVVIGHELTHGFDDKGRLFDRNGNIHKWWTDSSIRG 902
            :|.|:||||||||||:.:..|::|||||||:|||||:||||||.||.||:|||:..||::.|.|.
  Rat   574 RNLIVFPAGILQPPFFSKDQPQALNFGGIGMVIGHEITHGFDDNGRNFDKNGNMLDWWSNFSARH 638

  Fly   903 FDERARCIIAQYSNYTVEEV-GIVLNGESTQGENIADNGGLRQAFHAYQRWLKEHPSEVSDEILP 966
            |.::::|:|.||||::.|.. ...:||.||.|||||||||:|||:.||.:||.|..   .|:.||
  Rat   639 FRQQSQCMIYQYSNFSWELADNQNVNGFSTLGENIADNGGVRQAYKAYLQWLAEGG---RDQRLP 700

  Fly   967 GLNMTGPQLFFLNFGQVWCGAMRPEAIRNKLNTAIHSPGRFRVIGTLSNSVDFAREFNCPLGSPM 1031
            |||:|..||||:|:.|||||:.|||.....:.|.:|||.::||:|:|.|...|:..|:||.||||
  Rat   701 GLNLTYAQLFFINYAQVWCGSYRPEFAIQSIKTDVHSPLKYRVLGSLQNLPGFSEAFHCPRGSPM 765

  Fly  1032 NPQKKCSVW 1040
            :|..:|.:|
  Rat   766 HPMNRCRIW 774

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nep4NP_650904.3 M13 274..1038 CDD:189000 273/781 (35%)
Mmel1NP_001101467.2 Stop-transfer sequence. /evidence=ECO:0000255 14..21
M13 106..772 CDD:341056 273/780 (35%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166344515
Domainoid 1 1.000 257 1.000 Domainoid score I1948
eggNOG 1 0.900 - - E1_COG3590
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H22778
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG61902
OrthoDB 1 1.010 - - D157132at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100162
Panther 1 1.100 - - O PTHR11733
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
109.760

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