DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nep4 and Mme

DIOPT Version :10

Sequence 1:NP_650904.3 Gene:Nep4 / 42449 FlyBaseID:FBgn0038818 Length:1040 Species:Drosophila melanogaster
Sequence 2:NP_036740.1 Gene:Mme / 24590 RGDID:3098 Length:750 Species:Rattus norvegicus


Alignment Length:827 Identity:278/827 - (33%)
Similarity:423/827 - (51%) Gaps:141/827 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   238 ISEATAALQSFWNEEGTREGIRMTQAKTMKRYMDNKVDPCVDFYKYACGNWERLHPIPKDKAGFD 302
            |:....||.:.:::...:....:..|..:.:.||...:||.||:|||||.|.:.:.||:..:.:.
  Rat    41 IAVTMIALYATYDDGICKSSDCIKSAARLIQNMDASAEPCTDFFKYACGGWLKRNVIPETSSRYS 105

  Fly   303 TFEMLRESLDLVLRNLLEKNTPVHSAAELRKSPVRNTLFKLNEQGEGEGEADQAAELTAERLRRH 367
            .|::||:.|:::|::                                                  
  Rat   106 NFDILRDELEVILKD-------------------------------------------------- 120

  Fly   368 IVSKRQLLNRVLVRYKRYTNGTKRKRLIETPRERTKEEEAAPPVVLPKDKTKDKSDNEEQLHVPT 432
                                                        ||.:.||:|..          
  Rat   121 --------------------------------------------VLQEPKTEDIV---------- 131

  Fly   433 DFLKPHQDAQLKAKNLYRSCVNSAVLAKRGLEPLHTLIRELGGWPVLESQWSES-NFNW---QVL 493
                    |..|||.|||||:|.:.:..||.:||.||:.::.||||....|.:: ..:|   :.:
  Rat   132 --------AVQKAKTLYRSCINESAIDSRGGQPLLTLLPDIYGWPVASQNWEQTYGTSWTAEKSI 188

  Fly   494 AATLRRYNNDILIVQWVGADIKNSEENIVQFDQTGLGLPTREYFLQPSNAKYLQAYQRY------ 552
            |....:|...:||..:||.|.|||.::|:.|||..||||:|:|:  .....|.:|...|      
  Rat   189 AQLNSKYGKKVLINFFVGTDDKNSTQHIIHFDQPRLGLPSRDYY--ECTGIYKEACTAYVDFMIS 251

  Fly   553 MAEVMHKMGASKADAQRVASEL---VAFETQLAGITAPAEQRLNVTKLYKRMTLDQLQAVVP-EI 613
            :|.::.:......|..:::.|:   :..|.::|..|...|.|.:...||.:|||.:||.... ||
  Rat   252 VARLIRQEQRLPIDENQLSLEMNKVMELEKEIANATTKPEDRNDPMLLYNKMTLAKLQNNFSLEI 316

  Fly   614 KWRAYLQSLQDREVLGT--------EEVVIYAVEYMSKLVTLLDETDPRTVSNYMMWRFVRHRIN 670
            ..:.:..|....|::.|        ||||:||.||::||..:|.:..||.:.|.|.|||:...::
  Rat   317 NGKPFSWSNFTNEIMSTVNINIQNEEEVVVYAPEYLTKLKPILTKYSPRDLQNLMSWRFIMDLVS 381

  Fly   671 NVDDRFDDIKQSFYHALFGREESPQRWKVCIAQVNTNMGMAVGSMFVSRYFDNNSKRDTLRMTHD 735
            ::...:.:.:.:|..||:|.......|:.|...||.||..|||.::|...|...||.....:...
  Rat   382 SLSRNYKESRNAFRKALYGTTSETATWRRCANYVNGNMENAVGRLYVEAAFAGESKHVVEDLIAQ 446

  Fly   736 LQQAFRDILKTTDWLDDTTKQLAEEKVNAMSLKIGYPDFIL-NPSELNSKYAGIEIYPEKYFENT 799
            :::.|...|....|:|..||:.||||..|:..:|||||.|: |.::||::|..:....|:||||.
  Rat   447 IREVFIQTLDDLTWMDAETKKKAEEKALAIKERIGYPDDIISNENKLNNEYLELNYKEEEYFENI 511

  Fly   800 LNVLLHTAKTEQAKLHERVNKTNWQTAPAIVNAYYSRNKNQIMFPAGILQPPFYHRHFPKSLNFG 864
            :..|..:...:..||.|:|:|..|.:..|:|||:||..:|||:||||||||||:......|||:|
  Rat   512 IQNLKFSQSKQLKKLREKVDKDEWISGAAVVNAFYSSGRNQIVFPAGILQPPFFSARQSNSLNYG 576

  Fly   865 GIGVVIGHELTHGFDDKGRLFDRNGNIHKWWTDSSIRGFDERARCIIAQYSNYTVEEV-GIVLNG 928
            |||:|||||:||||||.||.|:::|::..|||..|...|.::::|::.||.|:|.:.. |..|||
  Rat   577 GIGMVIGHEITHGFDDNGRNFNKDGDLVDWWTQQSANNFKDQSQCMVYQYGNFTWDLAGGQHLNG 641

  Fly   929 ESTQGENIADNGGLRQAFHAYQRWLKEHPSEVSDEILPGLNMTGPQLFFLNFGQVWCGAMRPEAI 993
            .:|.|||||||||:.||:.|||.::|::..|   ::||||::...|||||||.|||||..|||..
  Rat   642 INTLGENIADNGGIGQAYRAYQNYVKKNGEE---KLLPGLDLNHKQLFFLNFAQVWCGTYRPEYA 703

  Fly   994 RNKLNTAIHSPGRFRVIGTLSNSVDFAREFNCPLGSPMNPQKKCSVW 1040
            .|.:.|.:||||.||:||||.||.:||..|:|...|.|||::||.||
  Rat   704 VNSIKTDVHSPGNFRIIGTLQNSAEFADAFHCRKNSYMNPERKCRVW 750

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nep4NP_650904.3 M13 274..1038 CDD:341056 269/787 (34%)
MmeNP_036740.1 Stop-transfer sequence. /evidence=ECO:0000255 16..23
M13 79..748 CDD:341056 269/785 (34%)
Blue background indicates that the domain is not in the aligned region.

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