DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lrrk and CLV1

DIOPT Version :9

Sequence 1:NP_001262772.1 Gene:Lrrk / 42447 FlyBaseID:FBgn0038816 Length:2513 Species:Drosophila melanogaster
Sequence 2:NP_177710.1 Gene:CLV1 / 843915 AraportID:AT1G75820 Length:980 Species:Arabidopsis thaliana


Alignment Length:1325 Identity:264/1325 - (19%)
Similarity:421/1325 - (31%) Gaps:501/1325 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   868 IQLSTDDATTLFN-ESEDADWSVVGVNRS-----KVIFPNLSML----DMT---NNCLKEIPASL 919
            |..|:.||...|: .|.|.|..|:.:|.|     ..|.|.:.||    ::|   ||...|:|..:
plant    50 IHSSSPDAHCSFSGVSCDDDARVISLNVSFTPLFGTISPEIGMLTHLVNLTLAANNFTGELPLEM 114

  Fly   920 HELSSLSVLNISGNVNITELPP--------HLGLLSRLWNLNTRGCLLQEPLRSMIESKKHKTMD 976
            ..|:||.|||||.|.|:|...|        .|.:|. .:|.|..|.|..|    |.|.||.|.:.
plant   115 KSLTSLKVLNISNNGNLTGTFPGEILKAMVDLEVLD-TYNNNFNGKLPPE----MSELKKLKYLS 174

  Fly   977 -----IVGYLKSIYEDAQPYARMKLMVVGVAGIGKSTLLDLLRQGAGSGSSSSSHRSRASENHWA 1036
                 ..|.:...|.|.|     .|..:|:             .|||....|.:..||.      
plant   175 FGGNFFSGEIPESYGDIQ-----SLEYLGL-------------NGAGLSGKSPAFLSRL------ 215

  Fly  1037 KRMGHARSTSRSHRHSSASSANISTVGVDIGTWICEKRKRAPGSHGPVVFRTWDFGGQKEYYATH 1101
                      ::.|.......|..|.||.                 |      :|||     .|.
plant   216 ----------KNLREMYIGYYNSYTGGVP-----------------P------EFGG-----LTK 242

  Fly  1102 QYFLSKRSLYLVLWRISDGHKGLAELLQWLGNIQARAPNSPVIIVGTHFDAVGESISPQKAEQLQ 1166
            ...|...|..|.           .|:...|.|::      .:..:..|.:.:...|.|    :|.
plant   243 LEILDMASCTLT-----------GEIPTSLSNLK------HLHTLFLHINNLTGHIPP----ELS 286

  Fly  1167 QLIREKFIAIPDAEKIGLPRVIDSIEISCRTLHNIHLLANIIYDTAMQLRSPGSKEPMLLQKIPA 1231
            .|:..|                 |:::|..                           .|..:||.
plant   287 GLVSLK-----------------SLDLSIN---------------------------QLTGEIPQ 307

  Fly  1232 SYIALEDI--VNVIACNLRAAGRDPVLDGEQYKRLVTEQMRLHNYKSFRDAAELQQATTWCHENG 1294
            |:|.|.:|  :|:...||  .|:.|...||..|..|.|..  .|..:.:..|.|.:       ||
plant   308 SFINLGNITLINLFRNNL--YGQIPEAIGELPKLEVFEVW--ENNFTLQLPANLGR-------NG 361

  Fly  1295 VLLHYDDA---------------------TLRDYYFLDP----QWLCDMLAHVVTVRE-INPFAP 1333
            .|:..|.:                     .|.:.:|..|    ...|..|..:..|:. :|...|
plant   362 NLIKLDVSDNHLTGLIPKDLCRGEKLEMLILSNNFFFGPIPEELGKCKSLTKIRIVKNLLNGTVP 426

  Fly  1334 TGVMKLDDLQMLFRSVQVQGN---GNRSYIVS--LLNKFEVALTWDSRTLLIPSLLPSQEAATPN 1393
            .|:..|.    |...:::..|   |.....:|  :|::..::..|.|      ..:|......||
plant   427 AGLFNLP----LVTIIELTDNFFSGELPVTMSGDVLDQIYLSNNWFS------GEIPPAIGNFPN 481

  Fly  1394 SGSTVKLSQRSRGRSLGCSVSQEVNLNNLIYEQRSAPSSSSSSASVSQGLRRILLMTYFPSGFWS 1458
            ..:......|.||           |:...|:|.:.....::|:.:::.|:         |... |
plant   482 LQTLFLDRNRFRG-----------NIPREIFELKHLSRINTSANNITGGI---------PDSI-S 525

  Fly  1459 RLITRILADEQIIEAIRGVYMASQDYADFDLRTSLEQDTQWNLWQTGLALYYGPILIFKIWEVPF 1523
            |..|.|..|.. ...|.|                                           |:| 
plant   526 RCSTLISVDLS-RNRING-------------------------------------------EIP- 545

  Fly  1524 QKTERTQPFRTDGNRFKLKQDGIWSDVNLSSSSILEVYFPLYEVNISQEVDDNERQLLAEIRPHM 1588
                                .||.:..||.:            :|||      ..||...|...:
plant   546 --------------------KGINNVKNLGT------------LNIS------GNQLTGSIPTGI 572

  Fly  1589 SQVAKLLALTVDHIDLLLEDWYPSLGTRFVHTSEGRF------LITRLVLCPRCLWKLQLQQNNE 1647
            ..:..|..|.:...||   .....||.:|:..:|..|      .:...|.||             
plant   573 GNMTSLTTLDLSFNDL---SGRVPLGGQFLVFNETSFAGNTYLCLPHRVSCP------------- 621

  Fly  1648 PSDREVPPVGCNRPSRSSRRGAGAYFLHGVGDPGEDGALNVFSA----YLNATARRERRSEDSLG 1708
                       .||.::|.....|.|     .|... .:.|.:|    .|.:.|.|:...:.   
plant   622 -----------TRPGQTSDHNHTALF-----SPSRI-VITVIAAITGLILISVAIRQMNKKK--- 666

  Fly  1709 AGSDADSGVGPDSAGSSRNTSVDGHPGYHLPDNSNVCYAWMIEECILSVYNQSKISCPVHLEQSM 1773
                                                              ||..::..:...|.:
plant   667 --------------------------------------------------NQKSLAWKLTAFQKL 681

  Fly  1774 AQLAPDVIFADIPDKHTIPSECIIKGSLLGRGAFGFVFKANCKVRGARSFKPVAMKMLQPVPPGA 1838
            ...:.||:            ||:.:.:::|:|..|.|::.:..     :...||:|.|  |..| 
plant   682 DFKSEDVL------------ECLKEENIIGKGGAGIVYRGSMP-----NNVDVAIKRL--VGRG- 726

  Fly  1839 RAKESALMAFKVAVGKWDRDPLQHSCKAYCTARQELAVLLTLKHPNIVPLVG-ICIKPLALVL-E 1901
                         .|:.|     |...|      |:..|..::|.:||.|:| :..|...|:| |
plant   727 -------------TGRSD-----HGFTA------EIQTLGRIRHRHIVRLLGYVANKDTNLLLYE 767

  Fly  1902 LAPLGGLDALLRHYRRSGAHMGPHTFQTLVLQAARAIEYLHR---RRIIYRDLKSENVLVWELPQ 1963
            ..|.|.|..||  :...|.|:...|...:.::||:.:.|||.   ..|::||:||.|:|:....:
plant   768 YMPNGSLGELL--HGSKGGHLQWETRHRVAVEAAKGLCYLHHDCSPLILHRDVKSNNILLDSDFE 830

  Fly  1964 PHTEDSPRNLVHIKIADYGISRQTAPSGA----KGFGGTEGFMAPEIIRYNGEEEYTEKVDCFSF 2024
            .|            :||:|:::......|    ....|:.|::|||   |....:..||.|.:||
plant   831 AH------------VADFGLAKFLVDGAASECMSSIAGSYGYIAPE---YAYTLKVDEKSDVYSF 880

  Fly  2025 GMFIYENISLRQPF----EGHESIK------ECILEGSRPALT-----QRETQFPTCCL----DL 2070
            |:.:.|.|:.::|.    ||.:.::      |.|.:.|..|:.     .|.|.:|...:    .:
plant   881 GVVLLELIAGKKPVGEFGEGVDIVRWVRNTEEEITQPSDAAIVVAIVDPRLTGYPLTSVIHVFKI 945

  Fly  2071 MVLCWHEQPRRRPTASQIVSILSAP 2095
            .::|..|:...|||..::|.:|:.|
plant   946 AMMCVEEEAAARPTMREVVHMLTNP 970

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LrrkNP_001262772.1 Ank_2 111..200 CDD:289560
ANK 146..286 CDD:238125
ANK repeat 146..177 CDD:293786
Ank_4 179..232 CDD:290365
ANK repeat 179..209 CDD:293786
Ank_2 216..389 CDD:289560
ANK 361..477 CDD:238125
ANK repeat 361..390 CDD:293786
Ank_2 364..464 CDD:289560
ANK repeat 406..435 CDD:293786
ANK repeat 437..464 CDD:293786
LRR_8 <544..580 CDD:290566
leucine-rich repeat 547..569 CDD:275380
LRR_8 569..629 CDD:290566
leucine-rich repeat 570..595 CDD:275380
leucine-rich repeat 596..618 CDD:275380
leucine-rich repeat 619..641 CDD:275380
leucine-rich repeat 642..676 CDD:275380
leucine-rich repeat 677..730 CDD:275380
LRR_8 729..788 CDD:290566
leucine-rich repeat 731..754 CDD:275380
LRR_8 855..933 CDD:290566 28/77 (36%)
leucine-rich repeat 855..901 CDD:275380 12/38 (32%)
leucine-rich repeat 902..924 CDD:275380 8/28 (29%)
leucine-rich repeat 925..949 CDD:275380 12/31 (39%)
P-loop_NTPase 993..1211 CDD:304359 32/217 (15%)
COR 1230..1471 CDD:292713 56/273 (21%)
STYKc 1796..2092 CDD:214568 80/323 (25%)
STKc_LRRK 1801..2095 CDD:270902 81/321 (25%)
CLV1NP_177710.1 PLN00113 22..973 CDD:215061 264/1325 (20%)
leucine-rich repeat 96..119 CDD:275380 6/22 (27%)
leucine-rich repeat 120..145 CDD:275380 10/24 (42%)
leucine-rich repeat 146..169 CDD:275380 9/27 (33%)
leucine-rich repeat 170..193 CDD:275380 5/27 (19%)
leucine-rich repeat 194..217 CDD:275380 8/51 (16%)
leucine-rich repeat 218..242 CDD:275380 9/51 (18%)
leucine-rich repeat 243..266 CDD:275380 6/39 (15%)
leucine-rich repeat 267..290 CDD:275380 5/26 (19%)
leucine-rich repeat 291..314 CDD:275380 9/66 (14%)
leucine-rich repeat 315..338 CDD:275380 8/24 (33%)
leucine-rich repeat 339..362 CDD:275380 6/31 (19%)
leucine-rich repeat 363..386 CDD:275380 2/22 (9%)
leucine-rich repeat 387..410 CDD:275380 4/22 (18%)
leucine-rich repeat 411..457 CDD:275380 10/49 (20%)
leucine-rich repeat 458..481 CDD:275380 4/28 (14%)
leucine-rich repeat 482..505 CDD:275380 6/33 (18%)
leucine-rich repeat 506..527 CDD:275380 4/30 (13%)
leucine-rich repeat 530..553 CDD:275380 8/87 (9%)
leucine-rich repeat 554..577 CDD:275380 7/40 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 138 1.000 Inparanoid score I1805
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.050

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