DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lrrk and PEPR1

DIOPT Version :9

Sequence 1:NP_001262772.1 Gene:Lrrk / 42447 FlyBaseID:FBgn0038816 Length:2513 Species:Drosophila melanogaster
Sequence 2:NP_177451.1 Gene:PEPR1 / 843639 AraportID:AT1G73080 Length:1123 Species:Arabidopsis thaliana


Alignment Length:1191 Identity:246/1191 - (20%)
Similarity:392/1191 - (32%) Gaps:463/1191 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly   422 LAMLDLLLKHGARDDNGTAIGMAITCGDEAILSRLLARRVH--------PDSDYKINKKGL---- 474
            ||.|||       .:||.:..:..|...   |.||....::        |:|.::|.|..:    
plant   125 LATLDL-------SENGFSDKIPDTLDS---LKRLEVLYLYINFLTGELPESLFRIPKLQVLYLD 179

  Fly   475 ------PTPVEVNVFLPSTSNISYSAMFPNN-PTIIDWHSMGSSVQLSVV------RVPWMVSGV 526
                  |.|..:...........|:..|..| |     .|:|:|..|.::      .|..:...:
plant   180 YNNLTGPIPQSIGDAKELVELSMYANQFSGNIP-----ESIGNSSSLQILYLHRNKLVGSLPESL 239

  Fly   527 LLL---------NPKLQSHPRLNEVALTAITRIDFSHN-------------------VLTS---- 559
            .||         |..||...|........:..:|.|:|                   |:.|    
plant   240 NLLGNLTTLFVGNNSLQGPVRFGSPNCKNLLTLDLSYNEFEGGVPPALGNCSSLDALVIVSGNLS 304

  Fly   560 --IPQELFHLVSLRYLNVAQNKIT-DLPAPIGQTYGCPVLDELFLQDNQLT-TLPAAIFHLPALS 620
              ||..|..|.:|..||:::|::: .:||.:|   .|..|:.|.|.||||. .:|:|:..|..|.
plant   305 GTIPSSLGMLKNLTILNLSENRLSGSIPAELG---NCSSLNLLKLNDNQLVGGIPSALGKLRKLE 366

  Fly   621 ILDVSNNKLQ-QLPFDLWRAPKLRELNV-AFNLLRDLPV-----------------------PPM 660
            .|::..|:.. ::|.::|::..|.:|.| ..||..:|||                       |.:
plant   367 SLELFENRFSGEIPIEIWKSQSLTQLLVYQNNLTGELPVEMTEMKKLKIATLFNNSFYGAIPPGL 431

  Fly   661 QTSSSLLSLDKL-NLQSFEEPPS----------NKPRNV-------------TQQR--LTHRNLW 699
            ..:|||..:|.: |..:.|.||:          |...|:             |.:|  |...||.
plant   432 GVNSSLEEVDFIGNKLTGEIPPNLCHGRKLRILNLGSNLLHGTIPASIGHCKTIRRFILRENNLS 496

  Fly   700 S-----------ATLDITDNDMKWQHEQDLGDGKTAGVGSSQLSSLNIANNLFT-SIPAALPCLA 752
            .           :.||...|:.:......||..|       .|||:|::.|.|| .||..|..|.
plant   497 GLLPEFSQDHSLSFLDFNSNNFEGPIPGSLGSCK-------NLSSINLSRNRFTGQIPPQLGNLQ 554

  Fly   753 VNLTRLNMSYNSLRSMGHVTSYPA------TLKQLDLSHNEI--------SCWPSLPRITESD-- 801
             ||..:|:|.|.|..     |.||      :|::.|:..|.:        |.|..|..:..|:  
plant   555 -NLGYMNLSRNLLEG-----SLPAQLSNCVSLERFDVGFNSLNGSVPSNFSNWKGLTTLVLSENR 613

  Fly   802 -----PHLLCYSCVQLPEGRDDDYKTASSKGSSSSATSFRASVLKSVCRHRRHLRLEALRTLILA 861
                 |..       |||                                     |:.|.||.:|
plant   614 FSGGIPQF-------LPE-------------------------------------LKKLSTLQIA 634

  Fly   862 DN-----LLTRIQLSTDDATTLFNESEDADWSVVGVNRSKVIFPNLSMLDMTNNCLK-EIPASLH 920
            .|     :.:.|.|..|                       :|:.    ||::.|.|. ||||.|.
plant   635 RNAFGGEIPSSIGLIED-----------------------LIYD----LDLSGNGLTGEIPAKLG 672

  Fly   921 ELSSLSVLNISGNVNITELPPHLGLLSRLWNL----------------NTRGCLLQEP------- 962
            :|..|:.||||.| |:|   ..|.:|..|.:|                |..|.||.||       
plant   673 DLIKLTRLNISNN-NLT---GSLSVLKGLTSLLHVDVSNNQFTGPIPDNLEGQLLSEPSSFSGNP 733

  Fly   963 -------------LRSMI-----ESKKHKT------MDIVGYLKSIY------------------ 985
                         .||.:     :||..|:      :.::..|.|:.                  
plant   734 NLCIPHSFSASNNSRSALKYCKDQSKSRKSGLSTWQIVLIAVLSSLLVLVVVLALVFICLRRRKG 798

  Fly   986 ---EDAQPYARMKLMVVGVAGIGKSTLLDLL---------RQGAGSGSSSSSHRSR--ASENHWA 1036
               :||..:.:.:         |.|.||:.:         :...|.|:....:|:.  :.:.:..
plant   799 RPEKDAYVFTQEE---------GPSLLLNKVLAATDNLNEKYTIGRGAHGIVYRASLGSGKVYAV 854

  Fly  1037 KRMGHARSTSRSH-RHSSASSANISTVG-------VDI-GTWICEKRKRAPGSHGPVVFRTWDFG 1092
            ||:..|     || |.:.:....|.|:|       :.: |.|:   ||    ..|.:::|     
plant   855 KRLVFA-----SHIRANQSMMREIDTIGKVRHRNLIKLEGFWL---RK----DDGLMLYR----- 902

  Fly  1093 GQKEYYATHQYFLSKRSLYLVLWRISDGHKGLAELLQWLG--NIQARAPNSPVIIVGTHFDA--- 1152
                       ::.|.|||.||..:|...    .:|.|..  |:.....:.   :...|:|.   
plant   903 -----------YMPKGSLYDVLHGVSPKE----NVLDWSARYNVALGVAHG---LAYLHYDCHPP 949

  Fly  1153 -VGESISPQKAEQLQQLIREKFIAIPDAEKIGLPRVIDSIEISCRTLHNIHLLANIIYDTAMQLR 1216
             |...|.|      :.::.:..:. |.....||.|::|...:|..|:..                
plant   950 IVHRDIKP------ENILMDSDLE-PHIGDFGLARLLDDSTVSTATVTG---------------- 991

  Fly  1217 SPGSKEPMLLQKIPASYIALEDIVNVIACNLRAAGRDPVLDGEQYKRLVTEQMRLHNYKSFRDAA 1281
                         ...|||.|:....:    |....|....|.....|||.:..:.  |||.::.
plant   992 -------------TTGYIAPENAFKTV----RGRESDVYSYGVVLLELVTRKRAVD--KSFPEST 1037

  Fly  1282 ELQQATTWCH------ENGVLLHYDD--ATLRDYYFLDPQWLCDMLAHVVTVREI---------- 1328
            ::   .:|..      .|.|    :|  .|:.|...:|......:...|:.|.|:          
plant  1038 DI---VSWVRSALSSSNNNV----EDMVTTIVDPILVDELLDSSLREQVMQVTELALSCTQQDPA 1095

  Fly  1329 -NPFAPTGVMKLDDLQMLFRS 1348
             .|.....|..|:|::.|.||
plant  1096 MRPTMRDAVKLLEDVKHLARS 1116

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LrrkNP_001262772.1 Ank_2 111..200 CDD:289560
ANK 146..286 CDD:238125
ANK repeat 146..177 CDD:293786
Ank_4 179..232 CDD:290365
ANK repeat 179..209 CDD:293786
Ank_2 216..389 CDD:289560
ANK 361..477 CDD:238125 16/72 (22%)
ANK repeat 361..390 CDD:293786
Ank_2 364..464 CDD:289560 11/49 (22%)
ANK repeat 406..435 CDD:293786 5/12 (42%)
ANK repeat 437..464 CDD:293786 6/34 (18%)
LRR_8 <544..580 CDD:290566 13/60 (22%)
leucine-rich repeat 547..569 CDD:275380 9/46 (20%)
LRR_8 569..629 CDD:290566 21/61 (34%)
leucine-rich repeat 570..595 CDD:275380 8/25 (32%)
leucine-rich repeat 596..618 CDD:275380 10/22 (45%)
leucine-rich repeat 619..641 CDD:275380 5/22 (23%)
leucine-rich repeat 642..676 CDD:275380 14/58 (24%)
leucine-rich repeat 677..730 CDD:275380 16/88 (18%)
LRR_8 729..788 CDD:290566 23/65 (35%)
leucine-rich repeat 731..754 CDD:275380 11/23 (48%)
LRR_8 855..933 CDD:290566 24/83 (29%)
leucine-rich repeat 855..901 CDD:275380 9/50 (18%)
leucine-rich repeat 902..924 CDD:275380 10/22 (45%)
leucine-rich repeat 925..949 CDD:275380 10/23 (43%)
P-loop_NTPase 993..1211 CDD:304359 44/243 (18%)
COR 1230..1471 CDD:292713 30/138 (22%)
STYKc 1796..2092 CDD:214568
STKc_LRRK 1801..2095 CDD:270902
PEPR1NP_177451.1 PLN00113 47..1119 CDD:215061 246/1191 (21%)
leucine-rich repeat 77..100 CDD:275380
LRR_RI 90..280 CDD:238064 35/169 (21%)
leucine-rich repeat 101..124 CDD:275380
leucine-rich repeat 125..148 CDD:275380 9/32 (28%)
leucine-rich repeat 149..172 CDD:275380 4/22 (18%)
leucine-rich repeat 173..196 CDD:275380 2/22 (9%)
leucine-rich repeat 197..220 CDD:275380 7/27 (26%)
leucine-rich repeat 221..254 CDD:275380 5/32 (16%)
leucine-rich repeat 255..316 CDD:275380 12/60 (20%)
leucine-rich repeat 317..340 CDD:275380 8/25 (32%)
leucine-rich repeat 341..364 CDD:275380 10/22 (45%)
leucine-rich repeat 389..436 CDD:275380 9/46 (20%)
leucine-rich repeat 437..457 CDD:275380 6/19 (32%)
leucine-rich repeat 461..484 CDD:275378 2/22 (9%)
LRR_RI 490..711 CDD:238064 72/308 (23%)
leucine-rich repeat 508..531 CDD:275380 6/29 (21%)
leucine-rich repeat 532..555 CDD:275380 11/23 (48%)
leucine-rich repeat 556..579 CDD:275380 8/27 (30%)
leucine-rich repeat 580..603 CDD:275380 5/22 (23%)
leucine-rich repeat 604..627 CDD:275380 7/66 (11%)
leucine-rich repeat 628..651 CDD:275380 7/22 (32%)
leucine-rich repeat 652..676 CDD:275380 11/27 (41%)
leucine-rich repeat 677..699 CDD:275380 11/25 (44%)
leucine-rich repeat 700..720 CDD:275380 2/19 (11%)
PKc_like 833..1110 CDD:304357 66/360 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 138 1.000 Inparanoid score I1805
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.050

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