DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lrrk and LRR XI-23

DIOPT Version :9

Sequence 1:NP_001262772.1 Gene:Lrrk / 42447 FlyBaseID:FBgn0038816 Length:2513 Species:Drosophila melanogaster
Sequence 2:NP_172468.3 Gene:LRR XI-23 / 837531 AraportID:AT1G09970 Length:977 Species:Arabidopsis thaliana


Alignment Length:1129 Identity:233/1129 - (20%)
Similarity:404/1129 - (35%) Gaps:366/1129 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly  1162 AEQLQQLIREKF------IAIPDAEKI--GL-PRVIDSIEISCRTLHNI--------HLLANIIY 1209
            ::.||.|::.|.      :|:.|:.|:  |: |  ...|.::|.:..|:        .|..|..:
plant    28 SDDLQVLLKLKSSFADSNLAVFDSWKLNSGIGP--CSFIGVTCNSRGNVTEIDLSRRGLSGNFPF 90

  Fly  1210 DTAMQLRSPGSKEPMLLQKIPASYIAL-----EDIVNVIACNLRAAGRDPVLDG--EQYKRLVTE 1267
            |:..:::|        |:|:...:.:|     .|:.|..:......|.: :..|  .::..|...
plant    91 DSVCEIQS--------LEKLSLGFNSLSGIIPSDLKNCTSLKYLDLGNN-LFSGAFPEFSSLNQL 146

  Fly  1268 Q-MRLHN--------YKSFRDAAELQQATTWCHENGVLLHYDDATLRDYYFLDPQWLCDMLAHVV 1323
            | :.|:|        :||.|:|..|           |:|...|                      
plant   147 QFLYLNNSAFSGVFPWKSLRNATSL-----------VVLSLGD---------------------- 178

  Fly  1324 TVREINPF-----APTGVMKLDDLQMLF--------------------RSVQVQGNGNR----SY 1359
                 |||     .|..|:.|..|..|:                    |::::..:|..    |.
plant   179 -----NPFDATADFPVEVVSLKKLSWLYLSNCSIAGKIPPAIGDLTELRNLEISDSGLTGEIPSE 238

  Fly  1360 IVSLLNKFEVALTWDSRTLLIPSLLPSQEAATPNSGSTVKLSQRSRGRSLGCSVSQEVNLNNLIY 1424
            |..|.|.:::.|..:|.|..:|:                         ..|       ||.||.|
plant   239 ISKLTNLWQLELYNNSLTGKLPT-------------------------GFG-------NLKNLTY 271

  Fly  1425 EQRSAPSSSSSSASVSQG-------LRRILLMTYFPSGF----------WSRLITRILADEQIIE 1472
                    ..:|.::.||       |..::.:..|.:.|          :..|:...|...::..
plant   272 --------LDASTNLLQGDLSELRSLTNLVSLQMFENEFSGEIPLEFGEFKDLVNLSLYTNKLTG 328

  Fly  1473 AI-RGVYMASQDYADFDLRTSLEQDTQWNLWQTGLALYYGPI-------------LIFK---IWE 1520
            :: :|:    ...||||...:.|.            |..|||             |:.:   ...
plant   329 SLPQGL----GSLADFDFIDASEN------------LLTGPIPPDMCKNGKMKALLLLQNNLTGS 377

  Fly  1521 VP--FQKTERTQPFRTDGNRFK-LKQDGIWSDVNLSSSSILEVYFPLYEVNISQEVDDNERQLLA 1582
            :|  :......|.||...|... ....|:|.             .|..|: |..|:::.|..:.|
plant   378 IPESYANCLTLQRFRVSENNLNGTVPAGLWG-------------LPKLEI-IDIEMNNFEGPITA 428

  Fly  1583 EIRPHMSQVAKLLALTVDHIDLLLEDWYPSLG-----TRFVHTSEGRFLITRLVLCPRCLWKLQ- 1641
            :|:.     .|:|.......:.|.::....:|     |: |..:..||  |..:  |..:.||: 
plant   429 DIKN-----GKMLGALYLGFNKLSDELPEEIGDTESLTK-VELNNNRF--TGKI--PSSIGKLKG 483

  Fly  1642 ---LQQNNEPSDREVP-PVG-CNRPS--RSSRRGAGAYFLHGVGDPGEDGALNVFSAYLNATARR 1699
               |:..:.....|:| .:| |:..|  ..::........|.:|......|||:....|:.    
plant   484 LSSLKMQSNGFSGEIPDSIGSCSMLSDVNMAQNSISGEIPHTLGSLPTLNALNLSDNKLSG---- 544

  Fly  1700 ERRSEDSLGA--------GSDADSGVGPDSAGSSRNTSVDGHPGYHLPDNSNVCYAWM--IEECI 1754
              |..:||.:        .::..||..|.|. ||.|.|.:|:||        :|...:  ...||
plant   545 --RIPESLSSLRLSLLDLSNNRLSGRIPLSL-SSYNGSFNGNPG--------LCSTTIKSFNRCI 598

  Fly  1755 LSVYNQSK--------ISCPVHLEQSMAQLAPDVIFADIPD---------KH---TIPS------ 1793
                |.|:        :.|.|.  ..:..||..|.|..:..         ||   :|.|      
plant   599 ----NPSRSHGDTRVFVLCIVF--GLLILLASLVFFLYLKKTEKKEGRSLKHESWSIKSFRKMSF 657

  Fly  1794 ------ECIIKGSLLGRGAFGFVFKANCKVRGARSFKPVAMKMLQPVPPGARAKESALMAFKVAV 1852
                  :.|.:.:|:|||..|.|::.   |.|  ..|.||:|.::    .:..:::...|..:..
plant   658 TEDDIIDSIKEENLIGRGGCGDVYRV---VLG--DGKEVAVKHIR----CSSTQKNFSSAMPILT 713

  Fly  1853 GKWDRDPLQHSCKAYCTARQELAVLLTLKHPNIVPLVGICI----KPLALVLELAPLGGLDALLR 1913
            .:..|.      |.:.|   |:..|.:::|.|:|.|  .|.    ....||.|..|.|.|..:|.
plant   714 EREGRS------KEFET---EVQTLSSIRHLNVVKL--YCSITSDDSSLLVYEYLPNGSLWDMLH 767

  Fly  1914 HYRRSGAHMGPHTFQTLVLQAARAIEYLH---RRRIIYRDLKSENVLVWELPQPHTEDSPRNLVH 1975
            ..::|  ::|..|...:.|.||:.:||||   .|.:|:||:||.|:|:.|..:|           
plant   768 SCKKS--NLGWETRYDIALGAAKGLEYLHHGYERPVIHRDVKSSNILLDEFLKP----------- 819

  Fly  1976 IKIADYGISR-----QTAPSGAKGFGGTEGFMAPEIIRYNGEEEYTEKVDCFSFGMFIYENISLR 2035
             :|||:|:::     ...|.......||.|::||  ..|....:.|||.|.:|||:.:.|.::.:
plant   820 -RIADFGLAKILQASNGGPESTHVVAGTYGYIAP--AEYGYASKVTEKCDVYSFGVVLMELVTGK 881

  Fly  2036 QPFEGH--ES------------IKECILEGSRPALTQRETQFPTCCLDLMVLCWHEQPRRRPTAS 2086
            :|.|..  ||            .||.::|.....:.:...:.....|.:.::|....|..|||..
plant   882 KPIEAEFGESKDIVNWVSNNLKSKESVMEIVDKKIGEMYREDAVKMLRIAIICTARLPGLRPTMR 946

  Fly  2087 QIVSILSAPECIHLLDVVAMPHSE 2110
            .:|.::...|...|:.:|....|:
plant   947 SVVQMIEDAEPCRLMGIVISKESD 970

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LrrkNP_001262772.1 Ank_2 111..200 CDD:289560
ANK 146..286 CDD:238125
ANK repeat 146..177 CDD:293786
Ank_4 179..232 CDD:290365
ANK repeat 179..209 CDD:293786
Ank_2 216..389 CDD:289560
ANK 361..477 CDD:238125
ANK repeat 361..390 CDD:293786
Ank_2 364..464 CDD:289560
ANK repeat 406..435 CDD:293786
ANK repeat 437..464 CDD:293786
LRR_8 <544..580 CDD:290566
leucine-rich repeat 547..569 CDD:275380
LRR_8 569..629 CDD:290566
leucine-rich repeat 570..595 CDD:275380
leucine-rich repeat 596..618 CDD:275380
leucine-rich repeat 619..641 CDD:275380
leucine-rich repeat 642..676 CDD:275380
leucine-rich repeat 677..730 CDD:275380
LRR_8 729..788 CDD:290566
leucine-rich repeat 731..754 CDD:275380
LRR_8 855..933 CDD:290566
leucine-rich repeat 855..901 CDD:275380
leucine-rich repeat 902..924 CDD:275380
leucine-rich repeat 925..949 CDD:275380
P-loop_NTPase 993..1211 CDD:304359 14/65 (22%)
COR 1230..1471 CDD:292713 49/302 (16%)
STYKc 1796..2092 CDD:214568 84/321 (26%)
STKc_LRRK 1801..2095 CDD:270902 83/319 (26%)
LRR XI-23NP_172468.3 PLN00113 14..955 CDD:331614 229/1112 (21%)
leucine-rich repeat 74..98 CDD:275380 3/23 (13%)
leucine-rich repeat 99..122 CDD:275380 5/22 (23%)
leucine-rich repeat 123..145 CDD:275380 3/22 (14%)
leucine-rich repeat 146..170 CDD:275380 7/23 (30%)
leucine-rich repeat 171..196 CDD:275380 10/62 (16%)
leucine-rich repeat 197..220 CDD:275380 2/22 (9%)
leucine-rich repeat 221..244 CDD:275380 5/22 (23%)
leucine-rich repeat 245..268 CDD:275380 7/54 (13%)
leucine-rich repeat 269..291 CDD:275380 6/29 (21%)
leucine-rich repeat 292..310 CDD:275380 2/17 (12%)
leucine-rich repeat 316..340 CDD:275380 4/27 (15%)
leucine-rich repeat 341..363 CDD:275380 6/33 (18%)
leucine-rich repeat 364..387 CDD:275380 2/22 (9%)
leucine-rich repeat 388..411 CDD:275380 6/35 (17%)
leucine-rich repeat 412..435 CDD:275380 6/28 (21%)
leucine-rich repeat 436..459 CDD:275380 3/22 (14%)
leucine-rich repeat 460..483 CDD:275380 8/27 (30%)
leucine-rich repeat 484..507 CDD:275380 5/22 (23%)
leucine-rich repeat 508..531 CDD:275380 3/22 (14%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 138 1.000 Inparanoid score I1805
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.050

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